DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and WDY

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001303588.1 Gene:WDY / 26067056 FlyBaseID:FBgn0267449 Length:1069 Species:Drosophila melanogaster


Alignment Length:670 Identity:125/670 - (18%)
Similarity:226/670 - (33%) Gaps:253/670 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 WSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPIKG-------------------- 96
            |:|     ||.:|:   ..:|...      |..|::.: :|||.|                    
  Fly    97 WNE-----FVSYLI---FGFQEED------PSSQKESL-ILPISGPPMVRKSEHRSAICCLALLK 146

  Fly    97 -------LDHIAENI-LSYLDAESLKSSELVCKEWLRVISEGML--WKKLIE--RKVRTDSL--- 146
                   :|.:.|.| .|:...:|.::|.:    |:....|||:  |...:|  |...::|:   
  Fly   147 AKSDQVPIDEVTETINFSFGGEDSPEASGM----WVTASHEGMMRFWTSHMEPIRTASSESICMS 207

  Fly   147 -----------------WRGLAERRNWMQYL---FKPRPG------------QTQRPHSF----- 174
                             :.|.....::..:|   |:.:||            :.:.|..|     
  Fly   208 YAFFNNGKVHSKLILGDYAGNVRVLSYSPHLRGPFQAKPGAALIEVVWSDILRGKIPQFFPKEYI 272

  Fly   175 --HREL-----FPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGK---------- 222
              |.|:     |...||.:.:......|.::   |..|     .|:..:.||:..          
  Fly   273 NLHNEMVSCVYFSLHMNALFASAEYRNTKKY---RGRC-----PGMIMVTYDERSNFRIPLGVST 329

  Fly   223 ---------IVSGLRDNTIKIWD---RTDLQCVKTLMGHTGSVLC--LQYDDKVIISGSSDSTVR 273
                     :|:|..|..::|||   .|:...:  |.||.|.::.  :|.::..:.|......::
  Fly   330 FFVAESHNIVVTGGPDTFVRIWDVYIPTEPSAI--LTGHNGGIVLVFVQPEENKVYSVDYQKIIK 392

  Fly   274 VWDVNTGEMVNT------LIHHCEAVL------HLR----------------------------- 297
            |||::...::.|      ||||.|..|      |||                             
  Fly   393 VWDLHEHTLLQTYGDLVRLIHHSETDLTYYYHSHLRELVVAGRKLISIKCCPRVRVDLTDGNTHA 457

  Fly   298 -----------FNNGMMVTCSKDRSIAVWD-MTSPSEITLR----RVLVGHRAAVNVVD--FD-- 342
                       |.|  :|:|..|..|.||| .|...:|.::    :::.|....:.:..  ||  
  Fly   458 APVSVVLYNRLFRN--IVSCGLDSYIIVWDPWTGRRKIIMKSCHTKMIYGEIIDIEITAACFDPL 520

  Fly   343 EKYIVSASGDRTIKVWSTSSCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNSIRLWDI---EC 402
            |:::::.:.|.::|:|:.::...||.::  ..:...|.:...||::..|.........|:   |.
  Fly   521 EQFLLTGARDGSLKIWNYNNAVVVRNMSIMPDQEVTAVIWVVDRILAMGWDRQVTEFNDVVGREY 585

  Fly   403 GACLRVLEGHEELVRCIRFDTK---RIVSGAYDGKIKVWDL--------VAALDP---------- 446
            |...:..:.|.:.:.|.  |.|   .:|:..|.|:|..|.|        .:.:||          
  Fly   586 GDPKKWPKFHTDDITCA--DVKLGEGVVTATYSGEIIFWKLETGQPYRRYSVMDPTRFIELKLTA 648

  Fly   447 ----------RAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTGR 501
                      |.||...........|||..|              .|:|      ..|.:|:...
  Fly   649 EEEKFIRQSKRLASRLTHSGNHSLQTGRAGR--------------STVL------NRPEDNRDYG 693

  Fly   502 TPSPALMEHXHFVQRQLREL 521
            |..|..::. .|:|.:.:.|
  Fly   694 TDIPISVQAVLFLQTRPQTL 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 7/32 (22%)
F-box-like 89..136 CDD:289689 15/76 (20%)
WD40 <192..495 CDD:225201 80/423 (19%)
WD40 210..488 CDD:238121 77/398 (19%)
WD40 repeat 213..248 CDD:293791 10/56 (18%)
WD40 repeat 254..288 CDD:293791 7/41 (17%)
WD40 repeat 293..330 CDD:293791 15/87 (17%)
WD40 repeat 337..370 CDD:293791 8/36 (22%)
WD40 repeat 376..410 CDD:293791 7/36 (19%)
WD40 repeat 416..459 CDD:293791 14/73 (19%)
WD40 repeat 465..487 CDD:293791 3/21 (14%)
WDYNP_001303588.1 WD40 76..557 CDD:225201 90/490 (18%)
WD40 repeat 279..316 CDD:293791 7/44 (16%)
WD40 337..623 CDD:295369 61/291 (21%)
WD40 repeat 370..406 CDD:293791 6/35 (17%)
WD40 repeat 460..497 CDD:293791 11/38 (29%)
WD40 512..869 CDD:295369 43/224 (19%)
WD40 repeat 512..538 CDD:293791 6/25 (24%)
WD40 repeat 555..593 CDD:293791 7/37 (19%)
WD40 595..>859 CDD:225201 28/141 (20%)
WD40 repeat 600..622 CDD:293791 7/23 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467894
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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