DRSC/TRiP Functional Genomics Resources

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Protein Alignment slmb and pop2

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_594956.1 Gene:pop2 / 2543514 PomBaseID:SPAC4D7.03 Length:703 Species:Schizosaccharomyces pombe


Alignment Length:587 Identity:143/587 - (24%)
Similarity:221/587 - (37%) Gaps:172/587 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KIMDETNSNAQAFTTTMLYDPVRKKDSS--------PTYQTERELCFQYFTQWSE---SGQVDFV 61
            |:.:..:||:..|      .|..|.|:|        |..:...:|..|...|..|   .|...:.
pombe   152 KLDNSISSNSDNF------PPSPKVDTSNTVSPGSKPISEDLEDLNLQSIVQTFEDLPEGIQSYA 210

  Fly    62 EHLLSRMCHYQHGQ--INAYLKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWL 124
            ...|.|.|:.|..:  :|. .:|:|::|.::.||..    |.::||..||..|..|..||...|.
pombe   211 FFQLLRSCNRQSMRLLLNE-CEPLLKKDILSNLPFS----IVQSILLNLDIHSFLSCRLVSPTWN 270

  Fly   125 RVIS-EGMLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQTQRPHSFHR-----ELFPKIM 183
            |::. ....||.:.       ||:.......:|     |.......||...|.     :.||:|.
pombe   271 RILDVHTSYWKHMF-------SLFGFQINENDW-----KYANPNLNRPPFLHNDQISDDYFPEIF 323

  Fly   184 NDIDSIENNWRTGRHMLRR---------------------------------------------- 202
            .            ||.|.|                                              
pombe   324 K------------RHFLNRKRWLFPSIPPSHLSFPIHVPNFMITSLLLHKDRIITTSGSGTIQIH 376

  Fly   203 ------INCRSENSK-GVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQY-- 258
                  :..|.|..| ||:.::..:..:|||..|.|:::|:....:|.....||...:.||:.  
pombe   377 NAITGVLEARLEGHKEGVWAVKIHENTLVSGSIDKTVRVWNIEKAKCTHIFRGHISIIRCLEILV 441

  Fly   259 --------------DDKVIISGSSDSTVRVWDV--NTGEMVNTLIHHCEAVLHLRFNNGMMVTCS 307
                          |...|:|||.|.|:|||.:  ||...            :|..|     |.|
pombe   442 PSRLIRHGVEIVEPDQPYIVSGSRDHTLRVWKLPKNTDPP------------YLPDN-----TNS 489

  Fly   308 KDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGH 372
            .||    |: .:|..:   ..|:||..:|..:......:||.|.|.:|::|..|:.|.:..|.||
pombe   490 IDR----WE-KNPYFV---HTLIGHTDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGH 546

  Fly   373 KRGIACLQYRD--RLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKI 435
            ...|..:.|..  .:.:|||.|.|||:||:..|.|..|||||:..|..:.....|::||:.|..|
pombe   547 SLRIYSVLYEPERNICISGSMDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLISGSADSTI 611

  Fly   436 KVWDLVAALDPRAASNT-LCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKT 499
            ::|||          || ..|..|..::|.:.....||.:|: |.:|.::.:||.        :|
pombe   612 RIWDL----------NTGKPLMVLPSNSGYISSFVSDEHKII-SGNDGSVKLWDV--------RT 657

  Fly   500 GR 501
            |:
pombe   658 GK 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 10/42 (24%)
F-box-like 89..136 CDD:289689 15/47 (32%)
WD40 <192..495 CDD:225201 94/376 (25%)
WD40 210..488 CDD:238121 86/299 (29%)
WD40 repeat 213..248 CDD:293791 8/34 (24%)
WD40 repeat 254..288 CDD:293791 14/51 (27%)
WD40 repeat 293..330 CDD:293791 8/36 (22%)
WD40 repeat 337..370 CDD:293791 8/32 (25%)
WD40 repeat 376..410 CDD:293791 14/35 (40%)
WD40 repeat 416..459 CDD:293791 12/43 (28%)
WD40 repeat 465..487 CDD:293791 5/21 (24%)
pop2NP_594956.1 WD40 219..657 CDD:225201 124/510 (24%)
FBOX 242..282 CDD:197608 14/43 (33%)
WD40 360..654 CDD:238121 88/329 (27%)
WD40 repeat 395..429 CDD:293791 7/33 (21%)
WD40 repeat 434..504 CDD:293791 22/94 (23%)
WD40 repeat 509..544 CDD:293791 9/34 (26%)
WD40 repeat 550..586 CDD:293791 14/35 (40%)
WD40 repeat 630..653 CDD:293791 6/23 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR44156
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.040

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