DRSC/TRiP Functional Genomics Resources

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Protein Alignment slmb and pof11

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_594559.1 Gene:pof11 / 2541707 PomBaseID:SPAC29E6.01 Length:506 Species:Schizosaccharomyces pombe


Alignment Length:499 Identity:157/499 - (31%)
Similarity:248/499 - (49%) Gaps:102/499 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 ESGQVDFVEHLLSRMCHYQHGQINAY--LKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSS 116
            |:.::|.:..||:.:.  :.|.:..|  ::.:|..||..:.|    :.::..:.||||...|...
pombe    38 ENNRIDLIRDLLASLS--KEGVVAVYNHVRSLLFTDFTEVFP----EEVSLRVFSYLDQLDLCKC 96

  Fly   117 ELVCKEWLRVISEGMLWKKLIERKVRTDSLW----RGLAERRNWMQYLFKPRPGQTQRPHSFHR- 176
            :|:.|.|.|::.:..:||.|..:|.     |    ..|.|...|            :|.|.|.: 
pombe    97 KLMSKRWKRLLEDPGIWKALYMQKG-----WFVNENVLNEFEAW------------RRTHKFPQP 144

  Fly   177 --ELFPKIMNDI--------------DS-----------------IENNWRTGRHMLRRINCRS- 207
              |.|.|..|.|              ||                 :::|||.||.::...|..| 
pombe   145 RFENFLKQQNIIGPYGTMFLPQQFIFDSNGRPLLNWSYLYKEHAHLDSNWRHGRFLVSTFNNPSI 209

  Fly   208 ---------ENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDK-- 261
                     .....|||:||||..:|||.:|.|:.:||......:..|.||:||||||.:..:  
pombe   210 RFPADQDFRATLDSVYCVQYDDEIMVSGSKDRTVSVWDVNSRFILYKLYGHSGSVLCLDFCRRRN 274

  Fly   262 VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW--DMTSPSEIT 324
            :::|||||||:.:||......:.....|.:.||.:..:...:::.|:|.:..||  |.|||:|..
pombe   275 LLVSGSSDSTIIIWDWQNRRPLKVYFGHTDNVLGVVVSENYIISSSRDHTARVWRLDATSPAEAC 339

  Fly   325 LRRVLVGHRAAVNVVDFDEK--YIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVV 387
            : .||.||.|:||.|.:..|  .||:||.|||::.|..::...:|.::.|:|||||.||..:.:|
pombe   340 M-HVLRGHLASVNSVQYSSKTGLIVTASSDRTLRTWDITTGHCIRIIHAHQRGIACAQYNGKFIV 403

  Fly   388 SGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNT 452
            |||||.:||:::...|..||:|:|||:|:|.:||:.::||||.|||.:::|:             
pombe   404 SGSSDLTIRIFEASSGKLLRMLQGHEDLIRTVRFNDEKIVSGGYDGTVRIWN------------- 455

  Fly   453 LCLNTLVEH-------TGRVFRLQFDEFQIVSSSHDDTILIWDF 489
              .||..:|       ..|||.||||..:|::.:|...||:|:|
pombe   456 --FNTGEQHCVLHNSRNSRVFGLQFDHRRIIACTHSSEILVWNF 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 6/32 (19%)
F-box-like 89..136 CDD:289689 12/46 (26%)
WD40 <192..495 CDD:225201 120/321 (37%)
WD40 210..488 CDD:238121 111/290 (38%)
WD40 repeat 213..248 CDD:293791 15/34 (44%)
WD40 repeat 254..288 CDD:293791 12/35 (34%)
WD40 repeat 293..330 CDD:293791 12/38 (32%)
WD40 repeat 337..370 CDD:293791 12/34 (35%)
WD40 repeat 376..410 CDD:293791 16/33 (48%)
WD40 repeat 416..459 CDD:293791 13/42 (31%)
WD40 repeat 465..487 CDD:293791 10/21 (48%)
pof11NP_594559.1 F-box-like 77..119 CDD:289689 13/45 (29%)
WD40 <206..501 CDD:225201 114/308 (37%)
WD40 222..496 CDD:238121 111/289 (38%)
WD40 repeat 224..259 CDD:293791 15/34 (44%)
WD40 repeat 265..301 CDD:293791 12/35 (34%)
WD40 repeat 306..344 CDD:293791 12/38 (32%)
WD40 repeat 351..386 CDD:293791 12/34 (35%)
WD40 repeat 392..426 CDD:293791 16/33 (48%)
WD40 repeat 432..466 CDD:293791 14/48 (29%)
WD40 repeat 473..495 CDD:293791 10/21 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0281
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 240 1.000 Inparanoid score I815
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002886
OrthoInspector 1 1.000 - - oto101306
orthoMCL 1 0.900 - - OOG6_102978
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.750

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