DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and slmb

DIOPT Version :10

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_061499969.1 Gene:slmb / 1281180 VectorBaseID:AGAMI1_011941 Length:593 Species:Anopheles gambiae


Alignment Length:578 Identity:437/578 - (75%)
Similarity:475/578 - (82%) Gaps:30/578 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MMKMETDKIMDETNSNAQAFTTTMLYDPVRKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLL 65
            ||||:||||||:..||:| :||.:||||.|||:.|||:||||:.|..||::|:|:.||||||.||
Mosquito     1 MMKMDTDKIMDDGISNSQ-YTTQILYDPARKKEPSPTFQTERDTCLSYFSKWNEANQVDFVEQLL 64

  Fly    66 SRMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRVISEG 130
            |||||||||.||||||||||||||||||.|||||:||||||||||:||..:|.|||||.||||||
Mosquito    65 SRMCHYQHGHINAYLKPMLQRDFITLLPTKGLDHVAENILSYLDAKSLCRAERVCKEWSRVISEG 129

  Fly   131 MLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQTQRPHSFHRELFPKIMNDIDSIENNWRT 195
            |||||||||.|||||||||||||:.|::|||.||||.|.|.|.|:||||||||.||::|||||||
Mosquito   130 MLWKKLIERNVRTDSLWRGLAERKGWIKYLFIPRPGVTLRQHKFYRELFPKIMKDIEAIENNWRT 194

  Fly   196 GRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDD 260
            |.|.|:|||||||||||||||||||.||||||||||||||.|:.|||...|.|||||||||||||
Mosquito   195 GNHNLQRINCRSENSKGVYCLQYDDDKIVSGLRDNTIKIWSRSTLQCCMILTGHTGSVLCLQYDD 259

  Fly   261 KVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITL 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||:||.|
Mosquito   260 KVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMVSPTEIGL 324

  Fly   326 RRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 390
            |||||||||||||||||||||||||||||||||::::|||:||||||||||||||||||||||||
Mosquito   325 RRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNSTNCEFLRTLNGHKRGIACLQYRDRLVVSGS 389

  Fly   391 SDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCL 455
            |||||||||||||.|||:||||||||||||||:|||||||||||||||||.||||.||.:|||||
Mosquito   390 SDNSIRLWDIECGTCLRILEGHEELVRCIRFDSKRIVSGAYDGKIKVWDLQAALDIRAQTNTLCL 454

  Fly   456 NTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTGRTPSPALMEHXHFVQRQLRE 520
            .|||||||||||||||||||||||||||||||||||.:|.|..|..:...:::.. |        
Mosquito   455 KTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNCSPQEETTAPSSGGSIVPSNH-------- 511

  Fly   521 LHLQS-SSEGEEDDDADEDDEDDFEEEDSRNDAGAFMGGYVRHRDAGGSGSVTGSGSD 577
             |..| ||.|                 ......|..:||.|.....||.|.  |.|.|
Mosquito   512 -HNNSGSSSG-----------------SGSIGGGPAIGGVVGVGMGGGGGG--GGGGD 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:463465 29/37 (78%)
F-box_FBXW1B 85..135 CDD:438954 41/49 (84%)
WD40 210..488 CDD:238121 253/277 (91%)
WD40 repeat 213..248 CDD:293791 27/34 (79%)
WD40 repeat 254..288 CDD:293791 33/33 (100%)
WD40 repeat 293..330 CDD:293791 33/36 (92%)
WD40 repeat 337..370 CDD:293791 27/32 (84%)
WD40 repeat 376..410 CDD:293791 31/33 (94%)
WD40 repeat 416..459 CDD:293791 36/42 (86%)
WD40 repeat 465..487 CDD:293791 21/21 (100%)
slmbXP_061499969.1 None

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