DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and Btrc

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001347049.1 Gene:Btrc / 12234 MGIID:1338871 Length:619 Species:Mus musculus


Alignment Length:504 Identity:393/504 - (77%)
Similarity:440/504 - (87%) Gaps:7/504 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TDKIMDETNSNAQA----FTTTMLYDPVRKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLS 66
            |...|...|..|:|    .|::|:....||..:|  |:.|:|||.:||.|||||.||:|||||:|
Mouse   110 TSTAMKTENCVAKAKLANGTSSMIVPKQRKLSAS--YEKEKELCVKYFEQWSESDQVEFVEHLIS 172

  Fly    67 RMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGM 131
            :|||||||.||:||||||||||||.||.:|||||||||||||||:||.::|||||||.||.|:||
Mouse   173 QMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM 237

  Fly   132 LWKKLIERKVRTDSLWRGLAERRNWMQYLFKPR-PGQTQRPHSFHRELFPKIMNDIDSIENNWRT 195
            ||||||||.||||||||||||||.|.|||||.: |.:...|:||:|.|:|||:.||::||:|||.
Mouse   238 LWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRC 302

  Fly   196 GRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDD 260
            |||.|:||:||||.|||||||||||.|||||||||||||||::.|:|.:.|.||||||||||||:
Mouse   303 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDE 367

  Fly   261 KVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITL 325
            :|||:|||||||||||||.|||:||||||||||||||||||||||||||||||||||.||::|||
Mouse   368 RVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 432

  Fly   326 RRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 390
            |||||||||||||||||:|||||||||||||||:||:||||||||||||||||||||||||||||
Mouse   433 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 497

  Fly   391 SDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCL 455
            |||:||||||||||||||||||||||||||||.|||||||||||||||||:|||||||.:.||||
Mouse   498 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCL 562

  Fly   456 NTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTGRTPS 504
            .|||||:|||||||||||||||||||||||||||||......:..|:||
Mouse   563 RTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPS 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 29/37 (78%)
F-box-like 89..136 CDD:289689 36/46 (78%)
WD40 <192..495 CDD:225201 267/302 (88%)
WD40 210..488 CDD:238121 249/277 (90%)
WD40 repeat 213..248 CDD:293791 26/34 (76%)
WD40 repeat 254..288 CDD:293791 28/33 (85%)
WD40 repeat 293..330 CDD:293791 33/36 (92%)
WD40 repeat 337..370 CDD:293791 29/32 (91%)
WD40 repeat 376..410 CDD:293791 32/33 (97%)
WD40 repeat 416..459 CDD:293791 36/42 (86%)
WD40 repeat 465..487 CDD:293791 21/21 (100%)
BtrcNP_001347049.1 Beta-TrCP_D 153..191 CDD:403372 29/37 (78%)
F-box-like 195..242 CDD:403981 36/46 (78%)
WD40 317..595 CDD:238121 249/277 (90%)
WD40 repeat 320..355 CDD:293791 26/34 (76%)
WD40 repeat 361..395 CDD:293791 28/33 (85%)
WD40 repeat 400..437 CDD:293791 33/36 (92%)
WD40 repeat 444..477 CDD:293791 29/32 (91%)
WD40 repeat 483..517 CDD:293791 32/33 (97%)
WD40 repeat 523..566 CDD:293791 36/42 (86%)
WD40 repeat 572..594 CDD:293791 21/21 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837707
Domainoid 1 1.000 107 1.000 Domainoid score I6519
eggNOG 1 0.900 - - E1_KOG0281
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H39330
Inparanoid 1 1.050 805 1.000 Inparanoid score I493
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48038
OrthoDB 1 1.010 - - D150270at33208
OrthoFinder 1 1.000 - - FOG0002886
OrthoInspector 1 1.000 - - otm43447
orthoMCL 1 0.900 - - OOG6_102978
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 1 1.000 - - X2712
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.700

Return to query results.
Submit another query.