DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and Fbxw11

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_598776.1 Gene:Fbxw11 / 103583 MGIID:2144023 Length:563 Species:Mus musculus


Alignment Length:514 Identity:388/514 - (75%)
Similarity:442/514 - (85%) Gaps:19/514 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 METDKIMDETN-------------SNAQAFTTTMLYDPVRKKDSSPTYQTERELCFQYFTQWSES 55
            ::...:|::.|             ||.   |::::..  ||:.|...||.|::||.:||.|||||
Mouse    48 LQNTSVMEDQNEDESPKKSALWQISNG---TSSVIVS--RKRPSEGNYQKEKDLCIKYFDQWSES 107

  Fly    56 GQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVC 120
            .||:|||||:|||||||||.||:||||||||||||.||.:|||||||||||||||.||.::||||
Mouse   108 DQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVC 172

  Fly   121 KEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQTQRPHSFHRELFPKIMND 185
            |||.|||||||||||||||.||||.||:||:|||.|.|||||.||.... |:||:|.|:|||:.|
Mouse   173 KEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGP-PNSFYRSLYPKIIQD 236

  Fly   186 IDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHT 250
            |::||:|||.|||.|:||.||||||||||||||||.||:||||||:|||||::.|:|:|.|.|||
Mouse   237 IETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDDKIISGLRDNSIKIWDKSSLECLKVLTGHT 301

  Fly   251 GSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 315
            |||||||||::||::||||||||||||||||::||||||.||||||||:||:|||||||||||||
Mouse   302 GSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVW 366

  Fly   316 DMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQ 380
            ||.|.::||||||||||||||||||||:||||||||||||||||||:||||||||||||||||||
Mouse   367 DMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 431

  Fly   381 YRDRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALD 445
            |||||||||||||:||||||||||||||||||||||||||||.|||||||||||||||||.||||
Mouse   432 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALD 496

  Fly   446 PRAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTGRTPS 504
            |||.::||||.|||||:|||||||||||||:|||||||||||||||..|:.....|:||
Mouse   497 PRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPS 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 30/37 (81%)
F-box-like 89..136 CDD:289689 38/46 (83%)
WD40 <192..495 CDD:225201 262/302 (87%)
WD40 210..488 CDD:238121 243/277 (88%)
WD40 repeat 213..248 CDD:293791 25/34 (74%)
WD40 repeat 254..288 CDD:293791 27/33 (82%)
WD40 repeat 293..330 CDD:293791 30/36 (83%)
WD40 repeat 337..370 CDD:293791 30/32 (94%)
WD40 repeat 376..410 CDD:293791 32/33 (97%)
WD40 repeat 416..459 CDD:293791 36/42 (86%)
WD40 repeat 465..487 CDD:293791 20/21 (95%)
Fbxw11NP_598776.1 Beta-TrCP_D 99..137 CDD:403372 30/37 (81%)
F-box-like 141..188 CDD:403981 38/46 (83%)
WD40 261..539 CDD:238121 243/277 (88%)
WD40 repeat 264..299 CDD:293791 25/34 (74%)
WD40 repeat 305..339 CDD:293791 27/33 (82%)
WD40 repeat 344..381 CDD:293791 30/36 (83%)
WD40 repeat 388..421 CDD:293791 30/32 (94%)
WD40 repeat 427..461 CDD:293791 32/33 (97%)
WD40 repeat 467..510 CDD:293791 36/42 (86%)
WD40 repeat 516..538 CDD:293791 20/21 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 107 1.000 Domainoid score I6519
eggNOG 1 0.900 - - E1_KOG0281
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 805 1.000 Inparanoid score I493
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48038
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002886
OrthoInspector 1 1.000 - - otm43447
orthoMCL 1 0.900 - - OOG6_102978
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 1 1.000 - - X2712
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.760

Return to query results.
Submit another query.