DRSC/TRiP Functional Genomics Resources

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Protein Alignment slmb and fbxw7

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_004911205.1 Gene:fbxw7 / 100145670 XenbaseID:XB-GENE-1000486 Length:703 Species:Xenopus tropicalis


Alignment Length:576 Identity:166/576 - (28%)
Similarity:266/576 - (46%) Gaps:105/576 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPI 94
            |::.:|....|..:...:.|..||...::..::.|:......|...:...::|..|||||:||| 
 Frog   218 RRRITSVQPPTGLQEWLKMFQSWSGPEKLLALDELIDICEPTQVKHMMQVIEPQFQRDFISLLP- 281

  Fly    95 KGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQY 159
               ..:|..:||:||.:.|..:...|:.|..:..:.:||::    |.:.|.:...|..::..:. 
 Frog   282 ---KELALYVLSFLDPKDLLQAAQTCRYWRILAEDNLLWRE----KCKEDGIDEPLHLKKRKIS- 338

  Fly   160 LFKPRPGQTQRPHSF-----HRELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYD 219
                :||.|..|...     ||            |:.|||.|.....:: .:..:...:.|||:.
 Frog   339 ----KPGFTHSPWKSAYIRQHR------------IDTNWRRGELKSPKV-LKGHDDHVITCLQFC 386

  Fly   220 DGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVN 284
            ..:||||..|||:|:|.....:|::||:||||.|...|..|.:|||||:|.|::||:..|||.::
 Frog   387 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH 451

  Fly   285 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSA 349
            ||..|...|..:..:...:|:.|:|.::.|||:.:...:   .||:||.|||..|.:|.:.:||.
 Frog   452 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRVVSG 513

  Fly   350 SGDRTIKVW--STSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGH 412
            :.|..:|||  .|.:|  :.||.||...:..||:....|||||.|.|||:||:|.|.|:..|.||
 Frog   514 AYDFMVKVWDPETETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 576

  Fly   413 EELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLV---EHTGRVFRLQFDEFQ 474
            :.|...:......:|||..|..:|:||:         ....||.||.   :|...|..|||::..
 Frog   577 QSLTSGMELKDNILVSGNADSTVKIWDI---------KTGQCLQTLQGPNKHQSAVTCLQFNKNF 632

  Fly   475 IVSSSHDDTILIWDFLNFTPNENKTGRTPSPALMEHXHFVQRQLRELHLQSSSEGEEDDDADEDD 539
            :::||.|.|:.:||.        |||           .|::..:.   |:|...           
 Frog   633 VITSSDDGTVKLWDL--------KTG-----------EFIRNLVT---LESGGS----------- 664

  Fly   540 EDDFEEEDSRNDAGAFMGGYVRHRDAGGSGSVTGSGSDPESDD-----LDFDIDVE 590
                             ||.|....|..:..|...||...:::     ||||:|::
 Frog   665 -----------------GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDMK 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 6/37 (16%)
F-box-like 89..136 CDD:289689 14/46 (30%)
WD40 <192..495 CDD:225201 111/307 (36%)
WD40 210..488 CDD:238121 105/282 (37%)
WD40 repeat 213..248 CDD:293791 15/34 (44%)
WD40 repeat 254..288 CDD:293791 16/33 (48%)
WD40 repeat 293..330 CDD:293791 8/36 (22%)
WD40 repeat 337..370 CDD:293791 11/34 (32%)
WD40 repeat 376..410 CDD:293791 16/33 (48%)
WD40 repeat 416..459 CDD:293791 10/42 (24%)
WD40 repeat 465..487 CDD:293791 8/21 (38%)
fbxw7XP_004911205.1 F-box-like 277..321 CDD:372399 14/51 (27%)
WD40 370..646 CDD:238121 105/290 (36%)
WD40 repeat 380..415 CDD:293791 15/34 (44%)
WD40 repeat 421..455 CDD:293791 16/33 (48%)
WD40 repeat 460..494 CDD:293791 8/36 (22%)
WD40 repeat 501..534 CDD:293791 11/34 (32%)
WD40 repeat 540..574 CDD:293791 16/33 (48%)
WD40 repeat 582..614 CDD:293791 10/40 (25%)
WD40 repeat 623..645 CDD:293791 8/21 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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