DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab11 and RABA1i

DIOPT Version :9

Sequence 1:NP_477170.1 Gene:Rab11 / 42501 FlyBaseID:FBgn0015790 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_174177.1 Gene:RABA1i / 839755 AraportID:AT1G28550 Length:218 Species:Arabidopsis thaliana


Alignment Length:222 Identity:143/222 - (64%)
Similarity:176/222 - (79%) Gaps:15/222 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGA--REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQ 63
            |||  .||:|||||||||.|||||||||||||||||:|:.:|::|||||||||||:.|.|.:|||
plant     1 MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQ 65

  Fly    64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL 128
            |||||||||||||||||||||||||||||:.:|:|:|||||||:|||||.|.||||||||||:||
plant    66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADL 130

  Fly   129 RHLRSVPTDEAKLFAERNGLSFIETSALDSTNVETAFQNILTEIYRIVSQKQIR---DP----PE 186
            ||||::.|:|||.||||....|:|||||::.||:.||..:||:|||:||:|.:.   ||    |:
plant   131 RHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAGDDPTTALPK 195

  Fly   187 GDVIRPSNVEPIDVKPTVTADVRKQCC 213
            |.:|.      :..:..::|..:..||
plant   196 GQMIN------VGGRDDISAVKKPGCC 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab11NP_477170.1 Rab11_like 9..173 CDD:206660 123/163 (75%)
RABA1iNP_174177.1 Rab11_like 11..175 CDD:206660 123/163 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 267 1.000 Domainoid score I449
eggNOG 1 0.900 - - E2759_KOG0087
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 296 1.000 Inparanoid score I808
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1133775at2759
OrthoFinder 1 1.000 - - FOG0000259
OrthoInspector 1 1.000 - - otm2982
orthoMCL 1 0.900 - - OOG6_100582
Panther 1 1.100 - - O PTHR47979
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X277
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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