DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab11 and rab6a

DIOPT Version :10

Sequence 1:NP_477170.1 Gene:Rab11 / 42501 FlyBaseID:FBgn0015790 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_001315458.1 Gene:rab6a / 793785 ZFINID:ZDB-GENE-040426-2849 Length:208 Species:Danio rerio


Alignment Length:188 Identity:62/188 - (32%)
Similarity:115/188 - (61%) Gaps:10/188 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYRAI 76
            ||:|.:|:..|||::|::||..:.|:...::|||::|.::::.::.:|::.|:||||||||:|::
Zfish    14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 78

  Fly    77 TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRSVPTDEAKL 141
            ..:|.|.:..|::||||....:::...:|:.::|.....:::|||||||:||...|.|..:|.:.
Zfish    79 IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 143

  Fly   142 FAERNGLSFIETSALDSTNVETAFQNILTEIYRIVSQK----------QIRDPPEGDV 189
            .|:...:.||||||....||:..|:.:...:..:.|.:          ::..|||..|
Zfish   144 KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMIDIKLEKPPEQPV 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab11NP_477170.1 Rab11_like 9..173 CDD:206660 57/160 (36%)
rab6aNP_001315458.1 Rab6 14..174 CDD:206654 57/159 (36%)

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