DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab11 and rab32

DIOPT Version :10

Sequence 1:NP_477170.1 Gene:Rab11 / 42501 FlyBaseID:FBgn0015790 Length:214 Species:Drosophila melanogaster
Sequence 2:XP_012818396.1 Gene:rab32 / 496729 XenbaseID:XB-GENE-483399 Length:258 Species:Xenopus tropicalis


Alignment Length:251 Identity:66/251 - (26%)
Similarity:117/251 - (46%) Gaps:58/251 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKT-IKAQIWD------ 66
            :|||||::||:.||||::::.|:....|:...::||||:||.:.|..|..| ::.|:||      
 Frog    20 EYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVINWDSSTLVRLQLWDIAALQL 84

  Fly    67 -----------------------------TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV 102
                                         |.||||:..:|..||:.||||.:|:|:.:..|:|.:
 Frog    85 KRAQLLLYINVNNTQMVHSIQSAITFALSTTGQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAI 149

  Fly   103 ERWLRELRDHADQNIVI--------MLVGNKSDLRHLRSVPT-DEAKLFAERNGL-SFIETSALD 157
            .:|..:|    |..:.:        :|:.||.|.:...|:.: .:...|.:.||. ::.||||.|
 Frog   150 TKWKSDL----DSKVFLPSGGPIPAVLLANKCDQKKENSLQSPHQMDNFCKENGFAAWFETSAKD 210

  Fly   158 STNVETAFQNILTEIYRIVSQKQIRDPPEGDVIRPSNVEPIDVKPTVTADVRKQCC 213
            :.|::.|.:.::..|........:.:..:|.:.......|        |:.:.|||
 Frog   211 NMNIDEAARCLVENILANAKNFPVEENDDGSIRVDQEAMP--------AESKFQCC 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab11NP_477170.1 Rab11_like 9..173 CDD:206660 59/209 (28%)
rab32XP_012818396.1 Rab32_Rab38 23..257 CDD:206692 61/245 (25%)

Return to query results.
Submit another query.