DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab11 and Rab39

DIOPT Version :9

Sequence 1:NP_477170.1 Gene:Rab11 / 42501 FlyBaseID:FBgn0015790 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_001245568.1 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster


Alignment Length:216 Identity:92/216 - (42%)
Similarity:131/216 - (60%) Gaps:7/216 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEV-DGKTIKAQIWDTA 68
            |..::|.|:::|||||.||||:||..||..:|...|..|:||:|..|.||: ||..||.|:||||
  Fly     3 EPIFEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARLIEMKDGTQIKLQLWDTA 67

  Fly    69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHL- 131
            ||||:|:||.:|||.:||.||||||:.|.::|::..|:.|.:.|.: ...|..|||.|.||.:. 
  Fly    68 GQERFRSITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINAG 132

  Fly   132 --RSVPTDEAKLFAERNGLSFIETSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDVIRPSN 194
              |.|.|:||:.||:::||.|:||||....|||.||:.:..|:|..:...:.:.....|.|:...
  Fly   133 GHREVTTEEAQKFAKQHGLHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGF 197

  Fly   195 VEP--IDVKPTVTADVRKQCC 213
            ..|  :|....|....:..||
  Fly   198 SRPNSLDFNLVVAEPEKSSCC 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab11NP_477170.1 Rab11_like 9..173 CDD:206660 83/168 (49%)
Rab39NP_001245568.1 Rab39 8..218 CDD:133311 89/209 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454501
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47979
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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