DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab11 and Rab12

DIOPT Version :10

Sequence 1:NP_477170.1 Gene:Rab11 / 42501 FlyBaseID:FBgn0015790 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_037149.1 Gene:Rab12 / 25530 RGDID:3527 Length:243 Species:Rattus norvegicus


Alignment Length:215 Identity:79/215 - (36%)
Similarity:129/215 - (60%) Gaps:20/215 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERY 73
            |:..:|::||..||||::|:.|||.:.|....|||:||:|..:::|:.||.|:.||||||||||:
  Rat    39 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 103

  Fly    74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRSVPTDE 138
            .:|||||||.|.|.:|||||.|..|::::.:|::.:..:|.::..::|||||.|....|.:...:
  Rat   104 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQ 168

  Fly   139 AKLFAER-NGLSFIETSALDSTNVETAFQNILTEIYRIVSQKQIRD---------PPEGDVIRPS 193
            .:.||:: .|:.|.|.||.|:.||:..|..::.:|.:.:....:|.         .||.::  |.
  Rat   169 GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDVLRSELSNSILSLQPEPEI--PP 231

  Fly   194 NVEPIDVKPTVTADVRKQCC 213
            .:.|  .:|.|      :||
  Rat   232 ELPP--PRPHV------RCC 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab11NP_477170.1 Rab11_like 9..173 CDD:206660 69/164 (42%)
Rab12NP_037149.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
Rab12 42..243 CDD:206699 76/210 (36%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 64..78 6/13 (46%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 96..113 13/16 (81%)
Blue background indicates that the domain is not in the aligned region.

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