DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP93B and pac-1

DIOPT Version :9

Sequence 1:NP_650939.2 Gene:RhoGAP93B / 42496 FlyBaseID:FBgn0038853 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_498877.4 Gene:pac-1 / 176201 WormBaseID:WBGene00015418 Length:1605 Species:Caenorhabditis elegans


Alignment Length:1366 Identity:249/1366 - (18%)
Similarity:428/1366 - (31%) Gaps:462/1366 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 SEEKLTSSEVISSPRGRQSFRVST-----------------GDSSRSMDMQQQHPQG----YASR 191
            |.|.|..:..||:..|....|:|.                 .:::..:|:..|.|..    |.| 
 Worm    45 SNEDLAQNARISALLGEMRPRMSAMPPNGHQQQYQPQLRRKANTTNIVDVSSQVPSARNAIYGS- 108

  Fly   192 RSQDSCNQYKESGKSSDSSLSSAHGY-RRFNDSGVPVSGH--PDNLRLGSLQKQQRGGGKDNGAF 253
             .||.....:..|....||.|:...| :.:.::..|::|:  .:.:....::::....|....:.
 Worm   109 -WQDRHRPTRLYGSQLVSSSSTLPKYDQLYCNTASPLTGNGSTNTIATTGIRREPPEYGNVGRSV 172

  Fly   254 EMLQESTSSH--NLPHGSTSTSSSYAGGSGYGDKYFDHQLLPNHLQGYSSK----SSDIASPTHS 312
            ...|.:.|.|  :|..|...:|...|.|:.....|| ..|...|..|.||.    .|.:|.|...
 Worm   173 STWQVTNSEHRPSLQAGWLKSSRPLARGALSPAAYF-RDLENRHGSGASSPIVGGLSVVAVPITQ 236

  Fly   313 IHTPQSQKKKMSPDAAPA-AQYNYAQQQHQQRSAQRSGGGAAGTGAPAGKSYGGDREYKVSLARS 376
            .|.|.:....:|.|.:.: ...:...||.....:.:..|.|.....|                |.
 Worm   237 RHAPTAGLAPISDDISTSKVSLDTENQQLNNEDSDKISGSALSRNTP----------------RQ 285

  Fly   377 GSFMSSSINPAAAGHHSKSYRKSSAEAANGGA---------------ASDDSMHE--KYFKSVEN 424
            .|||      ||...|......:|.|:..||.               .|:|:.|:  :..:.:..
 Worm   286 ASFM------AAMQRHPLKESSTSIESNGGGTNTEEDQTVSATSKEDPSEDTGHDDPEETQEISE 344

  Fly   425 TPLSRRRH------TTNATKSGGG------------ASGSNTATSTAGSGSSSHKKHSSDSSPQS 471
            ||:.|.|:      ...:::|.||            ...||.||:..|:.|||.:|:|.|....|
 Worm   345 TPIRRSRNRNASLRNRQSSRSLGGLDFEKLRMGTARVGDSNEATAENGTSSSSSRKNSRDDGLTS 409

  Fly   472 PISPQTKSSRQAKTSATSTVPQLQHSPRLQEPSHSLDLLSLERISLGKSGPISPGGGTENLGLLT 536
              ||.|.:.....||:||                          |:..||..|...       :.
 Worm   410 --SPTTVAGPVFTTSSTS--------------------------SISTSGEASSTA-------VA 439

  Fly   537 HSSRGSNDSARQRQKSNNSSANRSQSHHYPGQSSLRHSASSSLDKRGYHVGGGSGDGRGVTGGEK 601
            .::.||..:...||.|:|||.:   |:|......:|.:..                         
 Worm   440 AAAAGSVAATTSRQTSSNSSVD---SNHNEAMKMIRRARP------------------------- 476

  Fly   602 RRSKQHHYQQQADNSDVEYDNGNTSPLYTNWDQEMPHLLPLKHYIIEQAKLSGRYEYRGGDGGDS 666
                                                     |.|::..                 
 Worm   477 -----------------------------------------KSYVLAT----------------- 483

  Fly   667 DSYHSDSQSEHSLSGHEPDNEDSDG---GSDTHGGYLEHNYGMIDDYANMGDSVSYYAYMYPPHD 728
                |.|.:|..||.....||.|..   .:.|.|..|..:.        ||.::|          
 Worm   484 ----SASMNEDVLSSSIIANEQSSSISHDTTTSGRELPSSL--------MGSTIS---------- 526

  Fly   729 PAGREDISENVEAVLEGIGGNATEPSAPTATAPKPKPRYQISYYDTV--SHSPSAGSGYHGQQLY 791
               .|..|....:.......|:.:.::.:..||.|...:::..:..:  |...|.|||.|     
 Worm   527 ---MEMRSGGASSATTTTTSNSGQQTSRSLNAPHPPATHRLQRFIALFNSSKTSDGSGEH----- 583

  Fly   792 SNTPPYSGHGHGHHVPPPSLPHQQQLHLEPSDTKQKQSQT-LPSPNRQISRLAGAGHQGSGPAAS 855
                                          ..::.|:|:| ||:     ||.|..|      ...
 Worm   584 ------------------------------KKSRMKRSRTSLPA-----SRFALPG------TIL 607

  Fly   856 SKEETGHSTVAGQQQVTVGTVTPASLSRPGHK---------MAPPSLKPTIQQIFPPSERAPGMG 911
            .::.....|....|::.:|        :.|.:         :...||...::.....:|:     
 Worm   608 QRDGVARQTWVKHQEIALG--------KSGKRNNWEDRWAVLCRRSLYLCVESPAYTTEK----- 659

  Fly   912 NLGLGGPTL--ACMKECDIEKFAADNLNLHSKGIFRKKASVR-----------------DMLSWT 957
            .:.||..|.  .|....||   |.|.|   |....:::..||                 :||||.
 Worm   660 TIELGSHTRVDVCNAIVDI---AYDWL---SSSFSKQRHVVRIVTQNRSEHLIELNTESEMLSWI 718

  Fly   958 AEAISRPMLALSRDKADKKTAIELFKLVQIYMADRKA--------RIGMTLNSVAIEIISASLPQ 1014
            :     .:.:.|.|.....::::..:|......:..|        ....::.|:|....|.:...
 Worm   719 S-----VLQSSSEDGIATGSSVDENELSTTGRHNNNAVSNSSALLHNSQSIASLASSSCSTATTS 778

  Fly  1015 QQLRDELYVQLCRQTTENPKRDSLIRGWELMAICLSYVPPSPTF-------QPTLLNYVNR---H 1069
            :.|..:..:|..:|...|.|....:.  ||.|..:|::|.|.:|       ..|..|..||   |
 Worm   779 EFLNSQHTLQQQQQQQTNQKHQQTVN--ELSAGIVSHLPTSKSFGGLSTTASSTTENAKNRLIMH 841

  Fly  1070 R-------------------DPS---FATCFMEVSKWPIHVQISHYATVCCRRLD---------- 1102
            |                   |||   .::..|..:....|    |:::......|          
 Worm   842 RYIAKNSQLQSPTANKKMETDPSTVPSSSQTMATTSSSFH----HHSSQAGPSRDIENGEAPTAT 902

  Fly  1103 -RIGSSGRRMAKKPTVDEVEQARQQILRNSMFGNTLSEVMDLQKEKFPFRKLPWIQTTLS----- 1161
             ....|||:..|.      :.|:|     ...|.:.......|::.......|.:...::     
 Worm   903 ATTPKSGRKWKKS------KAAKQ-----GSGGGSSGSSSGSQQQGAAGAPQPVLGVRIADCPTG 956

  Fly  1162 ---EHVLLL----------NGKQTEGIFRVSADVDEVGCMKNRLD-----------------RWD 1196
               :||.::          .|..|.||:|:..:...|..:|..|.                 ||.
 Worm   957 SCEDHVPMIVQACVCVIETYGMDTVGIYRIPGNTAAVNALKESLSNRGFDSVDLSKVESLDPRWR 1021

  Fly  1197 VPDYKNTLVDAHTPASLLKLWYRELYDPLIPDAYYEDCVNTEDPD-------KAKEIVNKLPEIN 1254
                     |.:..:||||::.|:|.:||:.|..|...::.....       |.:.::.|||..:
 Worm  1022 ---------DVNVVSSLLKMFLRKLPEPLLTDKLYPFFIDANRISTHHNRLHKLRNLLRKLPRPH 1077

  Fly  1255 QLVLTYLIHFLQQFAIPEVVSCTKMDSSNLAMVFAPNCLRCTSEDPKVILENARKEMSFMRTLIQ 1319
            ...|.:||..|.:  |.:.....||:..|||::|.|:.:|.:.::...::.:...:...:.|||.
 Worm  1078 YDTLRFLIVHLSE--ITKHSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQCKIIETLIH 1140

  Fly  1320 H 1320
            :
 Worm  1141 Y 1141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP93BNP_650939.2 WW 50..75 CDD:278809
MyTH4 956..1122 CDD:295320 37/216 (17%)
RhoGAP_KIAA1688 1133..1320 CDD:239854 46/228 (20%)
pac-1NP_498877.4 PH_ARHGAP21-like 613..728 CDD:269955 24/138 (17%)
PH 617..726 CDD:278594 22/132 (17%)
RhoGAP_ARHGAP21 945..1146 CDD:239860 43/208 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 87 1.000 Inparanoid score I3718
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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