DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HHEX and Nkx6-1

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:371 Identity:93/371 - (25%)
Similarity:142/371 - (38%) Gaps:107/371 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSKAAFSIENILEQKS---------------SSHRSQSRRGSSQSPVAV---------TAG---- 43
            ||....::.::.|.|:               ||..|.|...|...|:..         .||    
  Rat    18 SSPPLAALHSMAEMKTPLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGAHNPGGLKPPAAGGLSS 82

  Fly    44 ---------IATPHA----LAMPKASLATGSSSAAPTPSPSSATNIYDLS-REAAAAQYAMKSMD 94
                     .||||.    |:.|...:|:|::..:.:||.||:::....| ..|:||..|..:..
  Rat    83 LGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSASAAAAAAAAAA 147

  Fly    95 SSAVLAPTSL-----RFNPIYPDPASLFYQQVLQLQKNPSLFMPHFQAAAVAAAAAVQPTAYCDQ 154
            ::|..:|..|     ||:.:.|.|..            |.|:.....||..|.....:|.|....
  Rat   148 AAAASSPAGLLAGLPRFSSLSPPPPP------------PGLYFSPSAAAVAAVGRYPKPLAELPG 200

  Fly   155 YSPFTMDCEGFP----NPASAAAALYCNAYPAASFYMSNFGVKRKGGQIRFTSQQTKNLEARFAS 215
            .:|..     :|    :|....|.|.|..: ..|..:...| |||..:..|:.||...||..|..
  Rat   201 RTPIF-----WPGVMQSPPWRDARLACTPH-QGSILLDKDG-KRKHTRPTFSGQQIFALEKTFEQ 258

  Fly   216 SKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSKRSASAQGPIAGAAVGSPSSASSSS 280
            :|||:..||..||..|.:|:.|||.||||||.|||:.:.::.:.:.:                  
  Rat   259 TKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKK------------------ 305

  Fly   281 VPVLNLGSGSRCGQQSDEEDRMY-LSEDDEDDDE-----DEGEADE 320
                         :|..|.:|:. .||::||||:     |....||
  Rat   306 -------------KQDSETERLKGTSENEEDDDDYNKPLDPNSDDE 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 26/50 (52%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 21/100 (21%)
Repressor domain. /evidence=ECO:0000250 102..269 49/185 (26%)
Homeodomain 236..294 CDD:459649 29/57 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 12/75 (16%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 12/32 (38%)

Return to query results.
Submit another query.