DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HHEX and hoxc6b

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_073772180.1 Gene:hoxc6b / 58045 ZFINID:ZDB-GENE-000822-1 Length:228 Species:Danio rerio


Alignment Length:260 Identity:62/260 - (23%)
Similarity:98/260 - (37%) Gaps:69/260 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 PSPSSATNIYDLSRE-----AAAAQYAMKSMDSSAVLAPTSLRFNPIYPDPASLFYQQVLQLQKN 127
            ||.:.::..||..|.     ||.||..:.|              ||.|....::.:......:..
Zfish    22 PSVAISSTNYDPVRHFSPYGAAVAQNRIYS--------------NPFYSHQENVMFGSSRPYEYG 72

  Fly   128 PSLF------MPHFQAAAVAAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAYPAASFY 186
            .::|      :|..:........::......||..  ||:.:|           ....||.....
Zfish    73 SNMFYQDKDVLPSCRQGFGQTQGSLTQDYASDQGK--TMEPKG-----------SVQIYPWMQRM 124

  Fly   187 MSNFGV-----KRKGGQIRFTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRR 246
            .|:.||     :|:|.|| ::..||..||..|..::||:...|..:|..|.|::||:|.||||||
Zfish   125 NSHSGVGYGSDRRRGRQI-YSRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQIKIWFQNRR 188

  Fly   247 AKWRRANLSKRSASAQGPIAGAAVGSPSSASSSSVPVLNLGSGSRCGQQSDEEDRMYLSEDDEDD 311
            .||::                         .|:...:||.......||.:|:|:....:|.||.|
Zfish   189 MKWKK-------------------------ESNLTSILNDNGSVGAGQDTDKEETGETAEKDEHD 228

  Fly   312  311
            Zfish   229  228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 22/50 (44%)
hoxc6bXP_073772180.1 None

Return to query results.
Submit another query.