DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and hoxb3

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:280 Identity:67/280 - (23%)
Similarity:103/280 - (36%) Gaps:83/280 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 SSSHRSQSRRGSSQSPVAVTAGIATPHALAMPKASLATG-----------SSSAAPTPSPSSATN 75
            :|||.....:.||.|..::      .|:..:.||....|           |...:||.:|||.||
 Frog    34 TSSHMDNEFQRSSCSLQSL------GHSGPLVKAKNLNGSCMRPNLSSEQSQPLSPTANPSSNTN 92

  Fly    76 IYDLSREAAAAQYAMKSMDSSAVLAPTSLRFNPIYPDPASLFYQQVLQLQKNPSLFMPHFQAAAV 140
                            |..|.|.|:..|...:.....|||   :|:          .|..:.:..
 Frog    93 ----------------SSSSQASLSKPSPAKSQASGSPAS---KQI----------FPWMKESRQ 128

  Fly   141 AAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAYPAASFYMSNFGVKRKGGQIRFTSQQ 205
            .:.....|.|      |....|.|..:|..::|:                    |..:..:||.|
 Frog   129 NSKQKSSPPA------PAAESCGGDRSPPGSSAS--------------------KRARTAYTSAQ 167

  Fly   206 TKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSKRSASAQGPIAGAAV 270
            ...||..|..::||....|..:|..|.|::||:|.||||||.|:::....|..:|:.|       
 Frog   168 LVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKVKGMSSSSG------- 225

  Fly   271 GSPSSASSSSVPVLNLGSGS 290
                .||.:|.|.|::.|.:
 Frog   226 ----GASPTSTPPLSMQSSA 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 22/50 (44%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 23/55 (42%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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