DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and Emx1

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_001414509.1 Gene:Emx1 / 500235 RGDID:1564002 Length:290 Species:Rattus norvegicus


Alignment Length:273 Identity:72/273 - (26%)
Similarity:109/273 - (39%) Gaps:68/273 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSKAAFSIENILEQKSSSHRSQSRRGSSQSPVAVTAG--IATPHALAMPKASLA-TGSSSAAPTP 68
            ::|..|:||:::.:...:..|....|:...|:||.|.  ...|.||..|..|.| |...|..|..
  Rat    38 ATKRGFTIESLVAKDGGTGGSPGSGGAGSHPLAVAASEEPLRPTALNYPHPSAAETAFVSGFPAA 102

  Fly    69 SPSSAT-NIY--------DLSREAAAAQYAMKSMDSSAVLAPTSLRFNPIYPDPASLFYQQVLQL 124
            :.:.|: ::|        :.....|...:....:.||::..|.|. |:..:.||.. ||..||: 
  Rat   103 AAAGASRSLYGGPELVFPEAMNHPALTVHPAHQLGSSSLQPPHSF-FSAQHRDPLH-FYPWVLR- 164

  Fly   125 QKNPSLFMPH-FQAAAVAAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAYPAASFYMS 188
                :.|..| |||:.|       |......:.||.                             
  Rat   165 ----NRFFGHRFQASEV-------PQDGLLLHGPFA----------------------------- 189

  Fly   189 NFGVKRKGGQIR--FTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRR 251
                 ||..:||  |:..|...||..|..:.|:...||:.||..|.|::.|||.||||||.|::|
  Rat   190 -----RKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKR 249

  Fly   252 ANLSKRSASAQGP 264
            ..|.:     :||
  Rat   250 QKLEE-----EGP 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 23/52 (44%)
Emx1NP_001414509.1 None

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