Protein Alignment HHEX and Hoxa13

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: NP_001258284.1
• Gene: Hoxa13 / 500129
• RGDID: 1562483
• Length: 386
• Species: Rattus norvegicus
• Alignment Length: 309
• Identity: 73/309 - (23%)
• Similarity: 115/309 - (37%)
• Gaps: 69/309 - (22%)

  Fly     4 ATKSSKAAFSIENILEQKSSSHRSQSRRGSSQSPVAVTAGIATPHALAMPKASLATGSSSAAPTP 68
            |..::.||....|::...:......:...||....|.....|...|.|...|:.|..|||..|.|
  Rat    77 AAAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPTAAAAAAAAAAAAAAAAAASSSGGPGP 141

  Fly    69 ------------SPSSA-----------------TNIYDLSR--------------EAAAAQYAM 90
                        ||.||                 :..|..:|              .:|||.:|.
  Rat   142 AGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAFAD 206

  Fly    91 KSMDSSAVLAPTSLRFNPIYPDPASLFYQQVLQL------QKNPS-LFMPHFQAAAVAAAAAVQP 148
            |.||::   .|.:..|:....:.|  ||.|....      |..|. |.||..........:..:|
  Rat   207 KYMDTA---GPAAEEFSSRAKEFA--FYHQGYAAGPYHHHQPVPGYLDMPVVPGLGGPGESRHEP 266

  Fly   149 TAY-CDQYSPFT--------MDCEGFPNPASAAAALYCNAYPAASFYMSNFGVKRKGGQIR--FT 202
            ... .:.|.|:.        |.|   |...:....|:.:..|....:.|:....|:|.:.|  :|
  Rat   267 LGLPMESYQPWALPNGWNGQMYC---PKEQTQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYT 328

  Fly   203 SQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRR 251
            ..|.|.||..:|::|:::.::||.::....|::|||..||||||.|.::
  Rat   329 KVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	21/52 (40%)
Hoxa13	NP_001258284.1	HoxA13_N	<151..222	CDD:463521	15/73 (21%)
		Homeodomain	321..377	CDD:459649	21/55 (38%)