DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and cdx1

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_989416.1 Gene:cdx1 / 395055 XenbaseID:XB-GENE-485396 Length:262 Species:Xenopus tropicalis


Alignment Length:36 Identity:11/36 - (30%)
Similarity:15/36 - (41%) Gaps:10/36 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 KFQWPTQ----PMIQKVKSFGCHVIPSGYAPKQGQN 603
            |..||..    |::.:.|.|      .||...|||:
 Frog   137 KDMWPDDSYWFPLLLQKKKF------HGYFKFQGQD 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649
cdx1NP_989416.1 Caudal_act 13..141 CDD:461413 1/3 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..120
Homeodomain 151..206 CDD:459649 7/22 (32%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902 152..173 7/21 (33%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902 191..202
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..262
Blue background indicates that the domain is not in the aligned region.

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