Protein Alignment HHEX and Hoxc9

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: NP_001094377.1
• Gene: Hoxc9 / 368178
• RGDID: 1595784
• Length: 260
• Species: Rattus norvegicus
• Alignment Length: 235
• Identity: 61/235 - (25%)
• Similarity: 98/235 - (41%)
• Gaps: 46/235 - (19%)

  Fly    58 ATGSSSAAPTPSPSSATNIYDLSREAAAAQYAMKSMDSSAVLAPTSLRFNPIYPDP---ASLFYQ 119
            |||:..||..|| ....:..|....:.|.:.|:.|...:.|.:.:|:.::|..|.|   |...|.
  Rat    30 ATGAHPAAARPS-GLVPDCSDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYM 93

  Fly   120 QVLQLQKNPSLFMPHFQAAAVAAAAAVQPTAYCDQYSPFTMDC-----EGFPN------------ 167
            :......:.::..|.|.|.  ....|::|.||..:.:    ||     ..:|:
  Rat    94 RTWLEPLSGAVSFPSFPAG--GRHYALKPDAYPGRRA----DCGPGDGRSYPDYMYGSPGELRDR 152

  Fly   168 -----PASAAAALYCNAY-----------PAASFYMSNFGVKRKGGQIRFTSQQTKNLEARFASS 216
                 |:..|.||..:.:           |.|::..:....|::   ..:|..||..||..|..:
  Rat   153 APQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKR---CPYTKYQTLELEKEFLFN 214

  Fly   217 KYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSK 256
            .||:.:.|..:|..|.||:||||.||||||.|.::.|..|
  Rat   215 MYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 254

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	24/50 (48%)
Hoxc9	NP_001094377.1	Hox9_act	1..179	CDD:461369	32/155 (21%)
		Homeodomain	193..241	CDD:459649	19/50 (38%)