Protein Alignment HHEX and Hoxc13

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: XP_235695.3
• Gene: Hoxc13 / 315337
• RGDID: 1563984
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 258
• Identity: 66/258 - (25%)
• Similarity: 101/258 - (39%)
• Gaps: 52/258 - (20%)

  Fly    47 PH-ALAMPKASLAT-------------GSSSAAPTPSP---SSATNIYDLSREAAAAQYAMK-SM 93
            || .||.|.|.|..             .:...||.|:|   ||||..|  ......:.|..: |.
  Rat    72 PHPVLARPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGY--GYPFGGSYYGCRLSH 134

  Fly    94 DSSAVLAPTSLRFNPIYPDPASLFYQQVLQLQKNPSLFMPHFQAA----------AVAAAAAVQP 148
            :.:....|.|......||:|:.......|..:.....|.|.|.::          :|....:..|
  Rat   135 NVNLQQKPCSYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHP 199

  Fly   149 TAYCDQYSPFTMDCEGFPNPA---------------SAAAALYCNAYPAASFYMSNFGVKRKGGQ 198
            ....|...|    .||:.:.|               |.:|.|:.:.:|............|:|.:
  Rat   200 EPRHDALIP----VEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRK 260

  Fly   199 IR--FTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSKRSA 259
            .|  :|..|.|.||..:|:||:::.|:||.::....|::|||..||||||.|.::. :||..|
  Rat   261 KRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKV-VSKSKA 322

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	23/52 (44%)
Hoxc13	XP_235695.3	HoxA13_N	52..166	CDD:463521	24/95 (25%)
		Homeodomain	259..310	CDD:459649	20/50 (40%)