DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and hoxc3a

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_001128157.3 Gene:hoxc3a / 30421 ZFINID:ZDB-GENE-980526-532 Length:263 Species:Danio rerio


Alignment Length:108 Identity:40/108 - (37%)
Similarity:53/108 - (49%) Gaps:9/108 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 SFYMSNFGVKR----KGGQIRFTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQN 244
            |.|.:...|.|    |..::.|||.|...||..|..|.||....|..:|..|||||||:|.||||
Zfish   144 SKYSNGEAVVRNSSSKRARVAFTSSQLLELEKEFHFSAYLCRNRRLEMAELLKLTDRQIKIWFQN 208

  Fly   245 RRAKWRRANLSKRSASAQGPIAGAAVGSP----SSASSSSVPV 283
            ||.|:::.:..|.:|.:.....|.. ..|    .|.:.|.||:
Zfish   209 RRMKYKKDHKEKSTAKSSYTYLGTE-NQPLIISRSTTDSPVPL 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 27/50 (54%)
hoxc3aNP_001128157.3 None

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