Protein Alignment HHEX and Hoxc12

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: NP_001100266.1
• Gene: Hoxc12 / 300262
• RGDID: 1310539
• Length: 280
• Species: Rattus norvegicus
• Alignment Length: 202
• Identity: 53/202 - (26%)
• Similarity: 80/202 - (39%)
• Gaps: 50/202 - (24%)

  Fly    79 LSRE------AAAAQYAMKSMDSSAVLAPTSLRFNPIYP--------------DPASLFYQQVLQ 123
            |.||      .|....|:..::.|   .|.:|.|...||              ||.|.   |.|:
  Rat   107 LKREERGREPGAGPGAALLQLEPS---GPPALGFKYDYPAGGGGGDGNTGPPHDPPSC---QSLE 165

  Fly   124 LQKNPSLFMPHFQAAAVAAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAYPAASFYMS 188
            ...:.||.....:.|:.....::        .||.        ||....:|.....||    ..|
  Rat   166 SDSSSSLLNEGNKGASAGDPGSL--------VSPL--------NPGGGLSASGAPWYP----IHS 210

  Fly   189 NFGVKRKGGQIRFTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRAN 253
            ....|||    .::..|...||..|..:::::.:.||.|:.:|.|:|:|||.||||||.|.:|..
  Rat   211 RSRKKRK----PYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLL 271

  Fly   254 LSKRSAS 260
            |.:::.|
  Rat   272 LREQALS 278

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	20/50 (40%)
Hoxc12	NP_001100266.1	Homeodomain	213..269	CDD:459649	23/59 (39%)