Protein Alignment HHEX and Hoxd4

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: NP_001099355.1
• Gene: Hoxd4 / 288153
• RGDID: 1309690
• Length: 251
• Species: Rattus norvegicus
• Alignment Length: 261
• Identity: 62/261 - (23%)
• Similarity: 87/261 - (33%)
• Gaps: 104/261 - (39%)

  Fly    31 RGSSQSPVAVTAGIATPHALAMPKASLATGSSSAAPTPSPSSATNIYDLSREAAAAQYAMKSMDS 95
            ||..|.|....:..:.|            |....||.|:|        |....|.:|
  Rat    76 RGHGQEPSGPGSHYSAP------------GEPCPAPPPAP--------LPGARACSQ-------- 112

  Fly    96 SAVLAPTSLRFNPIYPDPASLFYQQVLQLQKNPSLFMPHFQAAAVAAAAAVQPTAYCDQYSPFTM 160
                 ||    .|..|.|.:..        |.|::..|..:...|.:.
  Rat   113 -----PT----GPKQPPPGTAL--------KQPAVVYPWMKKVHVNSV----------------- 143

  Fly   161 DCEGFPNPASAAAALYCNAYPAASFYMSNF-GVKRKGGQIRFTSQQTKNLEARFASSKYLSPEER 224
                  ||                    |: |.:.|..:..:|.||...||..|..::||:...|
  Rat   144 ------NP--------------------NYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRR 182

  Fly   225 RHLALQLKLTDRQVKTWFQNRRAKWRR----ANLSKRSASAQGPIAGAAVGSPSSASSSSVPVLN 285
            ..:|..|.|::||:|.||||||.||::    .|...||:|           |.||.|||:.|..:
  Rat   183 IEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSS-----------SSSSCSSSAAPSQH 236

  Fly   286 L 286
            |
  Rat   237 L 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	23/50 (46%)
Hoxd4	NP_001099355.1	Homeodomain	153..209	CDD:459649	24/55 (44%)