Protein Alignment HHEX and Hoxc6

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: XP_063119084.1
• Gene: Hoxc6 / 252885
• RGDID: 620626
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 237
• Identity: 64/237 - (27%)
• Similarity: 97/237 - (40%)
• Gaps: 60/237 - (25%)

  Fly    66 PTPSPSSATNIYDLSREAAAAQYAMKSMDSSAVLAPTSLRFNPIYPDPASLFYQQVLQLQKNPSL 130
            |.|.||                |..:....:::..|.:.|.:    .||...:.       :|..
  Rat    56 PPPRPS----------------YPERQYSCTSLQGPGNSRAH----GPAQAGHH-------HPEK 93

  Fly   131 FMPHFQAAAVAAAAAVQPTA--YCDQYSPFTMDCEGFPNPASAAAALYCNAYP-AASFYMSNFGV 192
            ..|..:.|.::.|:|....|  .|.|.:|        .:|:|||:.... .|| ....::|....
  Rat    94 SQPLCEPAPLSGASASPSPAPPACSQPAP--------DHPSSAASKQPI-VYPWMKKIHVSTVNP 149

  Fly   193 KRKGGQIR-----FTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRR- 251
            ...||:.:     :|.||...||..|..::||:...|..:|..|.|::||:|.||||||.||::
  Rat   150 NYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD 214

  Fly   252 ---ANLSKRSASAQGPIAGAAVGSPSSA--------SSSSVP 282
               .|...|||    |.||||..:.|:|        |.|:.|
  Rat   215 HRLPNTKVRSA----PPAGAAPSTLSAATPGTSEDHSQSATP 252

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	23/55 (42%)
Hoxc6	XP_063119084.1	None