Protein Alignment HHEX and pal-1

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: NP_001021209.1
• Gene: pal-1 / 175638
• WormBaseID: WBGene00003912
• Length: 270
• Species: Caenorhabditis elegans
• Alignment Length: 286
• Identity: 71/286 - (24%)
• Similarity: 105/286 - (36%)
• Gaps: 93/286 - (32%)

  Fly    27 SQSRRGSSQSPVAVTAGIATPHALAMPKASLATGSSSAAPTP------SPSSATNIY-------- 77
            |::...|:.||..|.|.:..||...||         ...|.|      .|:....||
 Worm    10 SENESSSTPSPTTVPADVTWPHYPMMP---------FMQPHPLREKMLQPTFDPQIYGRWSQMGD 65

  Fly    78 ------------DLSREAAAAQY-AMKSMDSSAVLA-PTSLRFNPIYPDPASLFYQQVLQLQKNP 128
                        .|.:.||..|. |::::|....|: .:|...:.:||.|:.:       :...|
 Worm    66 TGFYGHPDLYPFGLPQLAANGQIPAVEAVDVKPPLSNGSSSSDSGMYPSPSDM-------MTPFP 123

  Fly   129 S-----LFMPHFQAAAVAAAAAVQPTAYCDQYS--PFTMDCEGFPNPASAAAALYCNAYPAASFY 186
            |     .......|||.|||......|.|.|.|  || ||.:.|               ...|:.
 Worm   124 STSSGAASSSELSAAAAAAANYQMRAATCYQQSVWPF-MDYQQF---------------QGFSWK 172

  Fly   187 M---SNFGVKRKGG---------------QIR--------FTSQQTKNLEARFASSKYLSPEERR 225
            |   :|.|..|:..               ::|        ::..|...||..|.:|.:::.:.:.
 Worm   173 MPLGNNHGKDRRSSSDGKTLPTGPGTNNVRVRTADKYRMVYSDYQRLELEKEFHTSPFITSDRKS 237

  Fly   226 HLALQLKLTDRQVKTWFQNRRAKWRR 251
            .|:..|.||:||:|.||||||||.||
 Worm   238 QLSTMLSLTERQIKIWFQNRRAKDRR 263

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	21/58 (36%)
pal-1	NP_001021209.1	Homeodomain	208..263	CDD:459649	20/54 (37%)