DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and Hoxc4

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_038581.2 Gene:Hoxc4 / 15423 MGIID:96195 Length:264 Species:Mus musculus


Alignment Length:243 Identity:66/243 - (27%)
Similarity:93/243 - (38%) Gaps:72/243 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 PTPSPSSATNIYDL--------SREAAAAQYAMKSMDSSAVLAPTSLRFNPIYPDPASLFYQQVL 122
            |.|.||.....|..        ||....||......:.|..|.           :||.|      
Mouse    56 PPPRPSYPERQYSCTSLQGPGNSRAHGPAQAGHHHPEKSQPLC-----------EPAPL------ 103

  Fly   123 QLQKNPSLFMPHFQAAAVAAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAYP-AASFY 186
                           :..:|:.:..|.| |.|.:|        .:|:|||:.... .|| ....:
Mouse   104 ---------------SGTSASPSPAPPA-CSQPAP--------DHPSSAASKQPI-VYPWMKKIH 143

  Fly   187 MSNFGVKRKGGQIR-----FTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRR 246
            :|.......||:.:     :|.||...||..|..::||:...|..:|..|.|::||:|.||||||
Mouse   144 VSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRR 208

  Fly   247 AKWRR----ANLSKRSASAQGPIAGAAVGSPSSA--------SSSSVP 282
            .||::    .|...|||    |.||||..:.|:|        |.|:.|
Mouse   209 MKWKKDHRLPNTKVRSA----PPAGAAPSTLSAATPGTSEDHSQSATP 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 23/55 (42%)
Hoxc4NP_038581.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..130 23/114 (20%)
Antp-type hexapeptide 135..140 2/4 (50%)
Homeodomain 157..213 CDD:459649 23/55 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..264 14/43 (33%)

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