DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and Hoxc13

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_034594.1 Gene:Hoxc13 / 15422 MGIID:99560 Length:328 Species:Mus musculus


Alignment Length:259 Identity:65/259 - (25%)
Similarity:102/259 - (39%) Gaps:54/259 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PH-ALAMPKASLAT-------------GSSSAAPTPSP---SSATNIYDLSREAAAAQYAMKSMD 94
            || .||.|.|.|..             .:...||.|:|   ||||..|  ......:.|..: :.
Mouse    72 PHPVLARPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGY--GYPFGGSYYGCR-LS 133

  Fly    95 SSAVLAPTSLRFNP--IYPDPASLFYQQVLQLQKNPSLFMPHFQAA----------AVAAAAAVQ 147
            .:..|......::|  .||:|:.......|..:.....|.|.|.::          :|....:..
Mouse   134 HNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGH 198

  Fly   148 PTAYCDQYSPFTMDCEGFPNPA---------------SAAAALYCNAYPAASFYMSNFGVKRKGG 197
            |....|...|    .||:.:.|               |.:|.|:.:.:|............|:|.
Mouse   199 PEPRHDALIP----VEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGR 259

  Fly   198 QIR--FTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSKRSA 259
            :.|  :|..|.|.||..:|:||:::.|:||.::....|::|||..||||||.|.::. :||..|
Mouse   260 KKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKV-VSKSKA 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 23/52 (44%)
Hoxc13NP_034594.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..48
HoxA13_N 52..166 CDD:463521 23/96 (24%)
Homeodomain 259..310 CDD:459649 20/50 (40%)
Blue background indicates that the domain is not in the aligned region.

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