DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and hoxc5

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_002936695.2 Gene:hoxc5 / 100487879 XenbaseID:XB-GENE-485672 Length:225 Species:Xenopus tropicalis


Alignment Length:286 Identity:62/286 - (21%)
Similarity:98/286 - (34%) Gaps:100/286 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   559 RKRDVKINP------LTRQKFQWPTQPMIQKVKSFGCH----VIP------SGYAPKQGQNRHRQ 607
            |:.|.: ||      |:|..|....|.::||.::....    |||      :|.:|:|...:.|.
 Frog     6 RRLDAR-NPLKQETALSRLPFPRGNQGLLQKAEAGRARWLTPVIPALWKTEAGGSPEQKMTQDRP 69

  Fly   608 LEWKIVFPEAERYLESCLTGTQIKIYMITVLLLKTFVEPTLTPGLSMFGLEHLRAHLFWQCETNY 672
            |   :...||   |:.|                                        |...|...
 Frog    70 L---LAVQEA---LKKC----------------------------------------FPVVEEQQ 88

  Fly   673 AAWPEDYLGEALLRFLNALLDRIKTHTLPDYFLPARNL-FENVPE-RVLVELHKRIFR---ITEN 732
            ..|      ::.||....||..:.  .|.:....|:|| ||:||. |...:|.:|:.|   :..:
 Frog    89 GLW------QSALRDCQPLLSSLS--NLAEQLQAAQNLRFEDVPALRAFPDLKERLRRKQLVAGD 145

  Fly   733 PVMHLLIALRNLKLPSARLAFYPKVR------IKRLYSF-------LVIDNPLK--IVNPMLRDE 782
            .|:..|         ..|||...|||      ::|::..       :.||..|:  .|:|.:.|.
 Frog   146 IVLDKL---------GERLAILLKVRDMVSSHVERVFQIYEQHADTVGIDAVLQPSAVSPSVADM 201

  Fly   783 DENLAAEDSDENEANEREIAVGSMAY 808
            .|.|...:....::...|..|.|..|
 Frog   202 LEWLQDIERHYRKSKVPEEKVSSFVY 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649
hoxc5XP_002936695.2 Homeodomain 159..215 CDD:459649 12/55 (22%)
Blue background indicates that the domain is not in the aligned region.

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