DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment r-l and AT3G54470

DIOPT Version :9

Sequence 1:NP_524427.1 Gene:r-l / 42493 FlyBaseID:FBgn0003257 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_680130.1 Gene:AT3G54470 / 824612 AraportID:AT3G54470 Length:476 Species:Arabidopsis thaliana


Alignment Length:497 Identity:230/497 - (46%)
Similarity:327/497 - (65%) Gaps:36/497 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 MRALALKLFEINAFKFGDFKMKVGINSPVYFDLRVIVSYPDVMQTVSDLLVEHIKDKQLSAKH-- 71
            |.||.|:|.||.|.|||:||:|.||.||||.|||:|||||.::..:|..|:..:..   ||..  
plant     4 MEALILQLHEIGAVKFGNFKLKSGIFSPVYIDLRLIVSYPSLLTQISQTLISSLPP---SATFDV 65

  Fly    72 VCGVPYTALPLATIVSVQQGTPMLVRRKEAKAYGTKKLVEGIFNAGDTCLIVEDVVTSGSSILDT 136
            ||||||||||:||:|||..|.|||:||||.|.|||.|.:||||....||||:||:||||:|:|:|
plant    66 VCGVPYTALPIATVVSVSNGIPMLMRRKEIKDYGTSKAIEGIFEKDQTCLIIEDLVTSGASVLET 130

  Fly   137 VRDLQGEGIVVTDAVVVVDREQGGVANIAKHGVRMHSLFTLSFLLNTLHEAGRIEKSTVEAVAKY 201
            ...|:..|:.|:||||::||:|||..|:|::|:::||:..|:.::..|.|.|:||......:.|:
plant   131 AAPLRAVGLKVSDAVVLIDRQQGGRENLAENGIKLHSMIMLTDMVRVLKEKGKIEVEVEVNLLKF 195

  Fly   202 IAAVQINSDGTFVGGDKGDVVRANDLQRTK-----LTYENRANLAKSAVAKRLFNLIASKQTNLC 261
            :              ::...|....:::.|     |.::.|:.|:|:...|:||:::..|:||||
plant   196 L--------------EENRRVSVPSVEKPKPKPRVLGFKERSELSKNPTGKKLFDIMLKKETNLC 246

  Fly   262 LAADLTHADEILDVADKCGPYICLLKTHVDIVEDFSDKFIADLQALAQRHNFLLMEDRKFADIGN 326
            ||||:..|.|:||:|||.||.||||||||||:.||:..|.:.|:|:|.:|.||:.||||||||||
plant   247 LAADVGTAAELLDIADKVGPEICLLKTHVDILPDFTPDFGSKLRAIADKHKFLIFEDRKFADIGN 311

  Fly   327 TVSLQYGKGIYKISSWADLVTAHTLPGRSILQGLK-AGLGEGGAGKERGVFLLAEMSASGNLIDA 390
            ||::||..||:||..|||::.||.:.|..|:.||| .|:..|     ||:.||||||::|||...
plant   312 TVTMQYEGGIFKILEWADIINAHVISGPGIVDGLKLKGMPRG-----RGLLLLAEMSSAGNLATG 371

  Fly   391 KYKENSNKIATEGADVDFVAGVVCQSSDA----FAFPGLLQLTPGVKIDEGVDQLGQQYQSPEHV 451
            .|...:.|||  .|..|||.|.:..:..:    :.:|.::..||||::.:|.|.|||||.:|..|
plant   372 DYTAAAVKIA--DAHSDFVMGFISVNPASWKCGYVYPSMIHATPGVQMVKGGDALGQQYNTPHSV 434

  Fly   452 VKERGADIGVVGRGILKASSPKQAAQTYRDRLWAAYQDRVAK 493
            :.|||:||.:|||||:||.:|.:.|..||.:.|.||.::.::
plant   435 ITERGSDIIIVGRGIIKAENPAETAHEYRVQGWNAYLEKCSQ 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
r-lNP_524427.1 PRTases_typeI 1..202 CDD:294217 101/194 (52%)
OMPdecase 258..479 CDD:278637 114/225 (51%)
AT3G54470NP_680130.1 PRTases_typeI 7..199 CDD:412297 99/208 (48%)
OMPdecase 243..462 CDD:395160 114/225 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 218 1.000 Domainoid score I734
eggNOG 1 0.900 - - E1_COG0461
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H319
Inparanoid 1 1.050 428 1.000 Inparanoid score I421
OMA 1 1.010 - - QHG55508
OrthoDB 1 1.010 - - D1303452at2759
OrthoFinder 1 1.000 - - FOG0003431
OrthoInspector 1 1.000 - - oto3967
orthoMCL 1 0.900 - - OOG6_100519
Panther 1 1.100 - - LDO PTHR19278
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2793
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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