DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cortactin and Dbn1

DIOPT Version :9

Sequence 1:NP_001247222.1 Gene:Cortactin / 42491 FlyBaseID:FBgn0025865 Length:559 Species:Drosophila melanogaster
Sequence 2:XP_006517368.1 Gene:Dbn1 / 56320 MGIID:1931838 Length:707 Species:Mus musculus


Alignment Length:534 Identity:103/534 - (19%)
Similarity:183/534 - (34%) Gaps:133/534 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 WGSKTIDGSGRTAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHD 104
            |..:.:..:.:.|....:.|:.|..:..|:......::|.:||                 |:|..
Mouse    85 WVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASSVEDIDAG-----------------AIGQR 132

  Fly   105 YQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDR 169
            ....:.:.:|...:      :..::||         ::.|.|.....:.|.|        |:..|
Mouse   133 LSNGLARLSSPVLH------RLRLRED---------ENAEPVGTTYQKTDAA--------VEMKR 174

  Fly   170 VDKSAVGWDHIEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQ--VDHKVK 232
            :::... |:..:|.|:...:::..|....:...:::|.::.....:.:|...:...|  .:|:  
Mouse   175 INREQF-WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHR-- 236

  Fly   233 PVIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKDKRDREEAA--KKTVAENTPRTSTE 295
                 .|..:|.|          ||:::|.:||...   .|:||.||.:  ||:.:|.....:..
Mouse   237 -----RKQQSLEA----------EEAKRRLKEQSIF---GDQRDEEEESQMKKSESEVEEAAAII 283

  Fly   296 APPPKGSRAAIQ-----TGRTGGI--GNAISAFN------------------QMQSPVSETPPAR 335
            |..|...|...:     ...:||.  ..|.:.||                  ...|..|.:||..
Mouse   284 AQRPDNPREFFRQQERVASASGGSCDAPAPAPFNHRPGRPYCPFIKASDSGPSSSSSSSSSPPRT 348

  Fly   336 KEPIIIPKAQPVKIELEAKEEPTASTTSAAVAPTPTVVPAREPE-----TAPVAK---------- 385
            ..|.|.....|   .|.:....:...:...:||||  :|.|.|.     :.|:|:          
Mouse   349 PFPYITCHRTP---NLSSSLPCSHLDSHRRMAPTP--IPTRSPSDSSTASTPIAEQIERALDEVT 408

  Fly   386 --AAAPPPDVVPQIEVETVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPL 448
              ...|||...|..:.....||...|..|.....|..|||.|....:|   |||...|:::..||
Mouse   409 SSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEP---PQAQEPPLLQSSPL 470

  Fly   449 -----YQNQAEIKAASPLPPTNGTVSEAVAPSG----TATVPEEAIYANSDNLADYLEDTGIHAI 504
                 .::..:...|:|..|.....|.|...:.    |.|...:...||:...|         |.
Mouse   471 EDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPA---------AA 526

  Fly   505 ALYDYQAADDDEIS 518
            :|.|....:.:|.|
Mouse   527 SLIDLWPGNGEEAS 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CortactinNP_001247222.1 HS1_rep 84..119 CDD:396686 3/34 (9%)
HS1_rep 121..156 CDD:396686 5/34 (15%)
HS1_rep 158..193 CDD:396686 5/34 (15%)
HS1_rep 195..229 CDD:396686 3/35 (9%)
rne <327..489 CDD:236766 44/187 (24%)
SH3_Cortactin 502..554 CDD:212892 5/17 (29%)
Dbn1XP_006517368.1 ADF_drebrin_like 4..139 CDD:200437 10/70 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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