DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mvl and smf-1

DIOPT Version :9

Sequence 1:NP_001262795.1 Gene:Mvl / 42490 FlyBaseID:FBgn0011672 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001024792.2 Gene:smf-1 / 180939 WormBaseID:WBGene00004876 Length:562 Species:Caenorhabditis elegans


Alignment Length:493 Identity:284/493 - (57%)
Similarity:370/493 - (75%) Gaps:8/493 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 SDEKVLIPDDDSTNVGFSFRKLWAFTGPGFLMSIAYLDPGNIESDMQSGAAAKYKILWVLLWATV 120
            |.|:|.||.|| ....|||:|||||||||||||||||||||||||:||||.|.||:|||||.|.:
 Worm    36 SQERVDIPVDD-VEKAFSFKKLWAFTGPGFLMSIAYLDPGNIESDLQSGAQAAYKLLWVLLSAHI 99

  Fly   121 LGLLMQRLAARLGVVTGLHLAEMCYRQYKRLPRWILWIMIEIAIIGSDMQEVIGTAIAIYLLSNK 185
            :|:|:||::||||||:|.|:||:.|:.|.||||.|||:||||||:.|||||||||||||:|||..
 Worm   100 IGMLLQRMSARLGVVSGKHMAEVAYQFYPRLPRIILWLMIEIAIVCSDMQEVIGTAIAIFLLSKG 164

  Fly   186 VVPLWGGVLITIVDTFTFLFLDKYGLRKLEFLFGTLITIMAVSFGYEYIVSAPNQGEVLEGMFVP 250
            .|||:.||.|||:||||||.:|:||:||||.:||.||..|.||||||::|..|..|||:.||.||
 Worm   165 FVPLYVGVFITILDTFTFLLIDRYGIRKLELIFGFLILTMTVSFGYEFVVVKPPIGEVISGMVVP 229

  Fly   251 WCSNCNSNVLLQAVGVVGAVIMPHNLYLHSALVKSRDIDRRQTKKVSEANFYFFIEASVALFVSF 315
            ||:.|.....:||:.|||||||||||||||||||||.:||:..::|:|||.||.:|:::|||:||
 Worm   230 WCAGCGKGEFMQAISVVGAVIMPHNLYLHSALVKSRRVDRKDRRRVAEANKYFTLESAIALFLSF 294

  Fly   316 IINLFVVAVFAHGMYGKTNNDVVEVCKDKSMYEDAKMSFVDNVNGTAIIDADLYKGGLFLGCTFG 380
            .||||||||||||:|.|||.||.|:|..:....||.:.    .|.|..::.|:||||::|||.||
 Worm   295 FINLFVVAVFAHGLYQKTNADVREMCIARHDIPDADIF----PNNTEPVEVDIYKGGIYLGCQFG 355

  Fly   381 AVAMYIWGVGILAAGQSSTMTGTYAGQFSMEGFLNLQWPRWCRVLVTRCIAIIPTFCLAMFSK-M 444
            |:||:|||:||.||||||||||||.|||.||||:.::||:|.|||:||.|||.||..|..:|: :
 Worm   356 AIAMFIWGIGIFAAGQSSTMTGTYTGQFVMEGFVKIEWPKWKRVLITRAIAITPTLVLTFYSQGV 420

  Fly   445 EDLTSMNDILNAVMSLQLPFAAIPTIAFTSCAAIMGEFVNGLGNKIVSILLTIVVIGVNLYFVVV 509
            ::||.|||.||.|..:|||||.||.|.|||...||.:|.:....:|.:::.:.:::.:|:||:..
 Worm   421 QNLTGMNDFLNCVQMIQLPFALIPIITFTSSRKIMHDFRSSKVFQIFALITSALILSINVYFISD 485

  Fly   510 QV-ENMEIKGGLLALVCIFAILYILFNLYLVIH-MAAC 545
            .| ..:..:..::.::......|:||.|||.:: :.:|
 Worm   486 YVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSC 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MvlNP_001262795.1 nramp 75..479 CDD:162246 259/404 (64%)
Nramp 97..486 CDD:279852 241/389 (62%)
smf-1NP_001024792.2 nramp 54..455 CDD:162246 259/404 (64%)
Nramp 76..462 CDD:279852 241/389 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158881
Domainoid 1 1.000 492 1.000 Domainoid score I182
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55471
Inparanoid 1 1.050 569 1.000 Inparanoid score I579
Isobase 1 0.950 - 0 Normalized mean entropy S1387
OMA 1 1.010 - - QHG54724
OrthoDB 1 1.010 - - D252569at33208
OrthoFinder 1 1.000 - - FOG0000712
OrthoInspector 1 1.000 - - otm14190
orthoMCL 1 0.900 - - OOG6_100775
Panther 1 1.100 - - LDO PTHR11706
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2295
SonicParanoid 1 1.000 - - X461
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.890

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