DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rlip and asap2b

DIOPT Version :9

Sequence 1:NP_650933.2 Gene:Rlip / 42484 FlyBaseID:FBgn0026056 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001038398.2 Gene:asap2b / 560581 ZFINID:ZDB-GENE-030131-5060 Length:1024 Species:Danio rerio


Alignment Length:537 Identity:92/537 - (17%)
Similarity:151/537 - (28%) Gaps:220/537 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 EEELDTKSPSKSKKSKTFKFTSSKSKEKREKSRDKSEKDSKHAEEEPSVSHKVKEKERDKEKDRD 135
            ||.||.......|..|:.|..:|..:              .|.|.|......: |:..|....:|
Zfish    41 EEALDLDRSVLHKMKKSVKAINSSGQ--------------THVENEEQYIQAI-ERFTDNTVYKD 90

  Fly   136 EPK-------------------------------------------------KKDKEEKRKEKDK 151
            :|:                                                 ||..::..|:.:.
Zfish    91 DPEMSNYFLTFAGFTKELTALFKNLLQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYET 155

  Fly   152 KADKKDK-KDKKSKQLSQQQDDVSAAEEVLALGYPVFGVSVSLATERSRCHDGVDIPLVVRDCID 215
            |..|.:| |.:.:||....:.::|..|           ::..:..||.                 
Zfish   156 KLSKIEKEKREHAKQHGLIRTEISGGE-----------IAEEMEKERR----------------- 192

  Fly   216 FLQDHLKCEQIYKIEPIKTR----LMHFKRLYNNREHDSAVDELNLPTACSLLKLFLRELPEPLL 276
             |.....||.:.|:..||.:    |:|....|.:.:.:...|.|.:   ...||.|:.:     |
Zfish   193 -LFQLQMCEYLIKVNEIKVKKGVDLLHNLIKYFHAQCNFFQDGLKV---VDNLKPFMEK-----L 248

  Fly   277 TTDLVARFEEVASHPKVTTQQAELQQLLEQLPKCNRTLLAWVLLHFDAVIQQERHNKLNAQSLAM 341
            .|||.|..:         ||.||.:||                                      
Zfish   249 ATDLTANKQ---------TQDAERKQL-------------------------------------- 266

  Fly   342 LLSPTLQMSHRLMVALLCHCNNLFADVQLIKYVPPLTSTSPKLPDTPEDIQTELRKQDSLL---- 402
                 ||:...|..||...|.                          ||.|::.....||.    
Zfish   267 -----LQLKETLKSALQSECK--------------------------EDAQSKQNAGYSLHQLQG 300

  Fly   403 SQIHSEMNAGFITKKRE--EQLWEVQRIITQLKRKLRTFEKKQEKTAEEVDNSSSAPPAVASEDT 465
            ::.|....:|.:.|:.|  .::|:.::  ..:|..|.|.                      |..|
Zfish   301 NKAHGTERSGMLLKRSEGLRKVWQKRK--CSVKNGLLTI----------------------SHGT 341

  Fly   466 TDSKPAGTPAVSTNNSISQEEPKTDTLTPKDAPNDF-TIDPSTGFILLPKSNPHRENLLRLQIEY 529
            .::.||....::.....:.:|.|...|...|....| |.|.:...:.:......:|..|....:.
Zfish   342 PNAPPANLNLLTCQVKRNPDEKKCFDLISHDRTYHFQTEDEAECQVWVSVLQNSKEEALNNAFKD 406

  Fly   530 DELMEWQNELKARIVAE 546
            |     |||.:..||.|
Zfish   407 D-----QNEGENNIVRE 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RlipNP_650933.2 RhoGap_RalBP1 187..368 CDD:239846 33/184 (18%)
asap2bNP_001038398.2 BAR 34..248 CDD:299863 42/258 (16%)
PH_ASAP 297..403 CDD:270071 21/129 (16%)
PH 306..393 CDD:278594 18/110 (16%)
ArfGap 421..537 CDD:279720
ANK repeat 548..579 CDD:293786
ANK <575..672 CDD:238125
Ank_5 <584..626 CDD:290568
ANK repeat 584..617 CDD:293786
Ank_5 606..660 CDD:290568
ANK repeat 619..650 CDD:293786
SH3_ASAP2 966..1021 CDD:212899
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.