DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Calx and frem3

DIOPT Version :9

Sequence 1:NP_001247215.1 Gene:Calx / 42481 FlyBaseID:FBgn0013995 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001131131.1 Gene:frem3 / 564383 ZFINID:ZDB-GENE-030131-9788 Length:3127 Species:Danio rerio


Alignment Length:424 Identity:104/424 - (24%)
Similarity:175/424 - (41%) Gaps:93/424 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   433 GDDEEADDPIRMYF-----EPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFV 492
            |.::....|.|:.:     |..:|.|.|.....||.:.|||.:...:.:...|:||||....||.
Zfish  1707 GGNKLKPQPFRLNWAWISMEREYYIVDETAKFLEVTLKRRGYLGETSFISIGTKDGTAKQDKDFR 1771

  Fly   493 GR-KGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAG 555
            |: :..:.|.||.....:::::..|..||..|.|.|:|..|...| |..|..|||.|:| ||.:.
Zfish  1772 GKAQKQVQFNPGQTSATWKVKIFTDKEFETSEVFAIQLSEPVMAV-LEYPDKATVEIVDPDDEST 1835

  Fly   556 IFAFTDSVFEITESVGRF------------ELKVMRYS---GARGTVIVPYWTENDTATESKDYE 605
            :| |..:.::|.|.:|..            ||.|:.|:   .|.||......:.:|..|..:||.
Zfish  1836 VF-FPQAEYQIEEDIGELLVPVHRSGDVSQELMVLCYTHQGSATGTTPSTVLSYSDYITRPEDYT 1899

  Fly   606 GARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPR--------------LAPDDTNKES 656
            ..   |.|:.:|.||...:.|:::|.|||:.:|.|.:..|.              :..|:.::.|
Zfish  1900 SI---LRFDKDEREKSCRIIIIDDSLYEKEETFNVSLSMPMGGQLGAKFPSTKVVILADNDDEPS 1961

  Fly   657 FFNRFFEKHEHSGEPTHDELAAKIKEVEKKPVQDLTELDRILLLSK---PRNGELTTAYVRIRES 718
            |   :|.:.|::.:.::..:..|:    .:...||::...:.:.|:   |.:.|....||.|..:
Zfish  1962 F---YFGETEYTVDESYGYVEVKV----WRTGTDLSKTATVTVRSRRTDPVSAEAGLDYVGISRN 2019

  Fly   719 ---------QEFKATV--------------DKLVAKANVSAVLG-------------TSSWKEQF 747
                     |.|:.|:              .:||.:..::||||             |...|.||
Zfish  2020 LDFAPGVTMQTFRVTILDDLGQPELEGPETFELVMRMPMNAVLGEPSKTVITINDTVTDLPKVQF 2084

  Fly   748 KDALTVIPADESEF------DNDDEEEEVPSCFS 775
            |:|...:...|.|.      ..|..:.....||:
Zfish  2085 KEAEYKVAEGEGEVKAMVYRSGDISQMSTVRCFT 2118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalxNP_001247215.1 caca 4..973 CDD:273296 104/424 (25%)
Na_Ca_ex 126..297 CDD:279963
Na_Ca_ex_C 300..414 CDD:293103
Calx_beta 441..529 CDD:197594 28/93 (30%)
Calx_beta 554..643 CDD:197594 28/103 (27%)
Na_Ca_ex 800..965 CDD:279963
frem3NP_001131131.1 Cadherin_3 236..387 CDD:292802
Cadherin_3 351..496 CDD:292802
Cadherin_3 465..628 CDD:292802
Cadherin_3 597..759 CDD:292802
Cadherin_3 725..872 CDD:292802
Cadherin_3 841..989 CDD:292802
Cadherin_3 955..1121 CDD:292802
Cadherin_3 1087..1235 CDD:292802
Cadherin_3 1203..1353 CDD:292802
Cadherin_3 1322..1466 CDD:292802
Cadherin_3 1434..1575 CDD:292802
Cadherin_3 1544..1705 CDD:292802
Calx-beta 1723..1810 CDD:295344 26/86 (30%)
Calx-beta 1834..1934 CDD:295344 28/103 (27%)
Calx-beta 1960..2053 CDD:295344 16/99 (16%)
Calx-beta 2080..2172 CDD:295344 10/39 (26%)
Calx-beta 2201..2292 CDD:295344
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1306
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.