DRSC/TRiP Functional Genomics Resources

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Protein Alignment Calx and adgrv1

DIOPT Version :9

Sequence 1:NP_001247215.1 Gene:Calx / 42481 FlyBaseID:FBgn0013995 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_009300028.1 Gene:adgrv1 / 415105 ZFINID:ZDB-GENE-040624-6 Length:6208 Species:Danio rerio


Alignment Length:438 Identity:113/438 - (25%)
Similarity:163/438 - (37%) Gaps:132/438 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   417 ERAHSDLTEVKAQLHA-GDDEEADDP-----IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYAS 475
            |:|.:::| |||..|. |..:....|     ||...|....||.|..|...:.|.|...:.....
Zfish  1677 EKAVNNIT-VKASDHPYGLLQFQTTPVPVGMIRPALEEARVTVQEEAGVVRLLVARAQGLLGRVM 1740

  Fly   476 VEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFR---IEVIDDDVFEEDECFYIRLFNPSEGVK 537
            |.|.|...||:...|:...:|.|.|.||   :||:   :.:||:.|.|.|:.|.:.|:||:.||.
Zfish  1741 VGYRTSPFTAAGSEDYEDTEGFLDFLPG---ERFKYINVTIIDNSVPELDKVFRVELYNPNGGVD 1802

  Fly   538 ------------------------------LAVPMIATVMILDDDHAGIFAF-TDSVF----EIT 567
                                          .|..:|.|:...|:.| |:|.| .||:.    |..
Zfish  1803 PYFASEGSGSGESETDFFLPSFHYHHANLGAAARIIVTIAASDEAH-GVFQFGADSLIVNGTEPE 1866

  Fly   568 ESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELV-------FENNESEKFIDLF 625
            |......|:|:|..||...|.| || |.|.|:|        ||||       ||..::.:.|.|.
Zfish  1867 EGRSTVVLQVIRTFGALSNVTV-YW-EADAASE--------GELVYRSGNVSFEVGQTVRSIYLL 1921

  Fly   626 ILEESSYEKDVSFKVHIGEPRLAPDDTNKESFFNRFFEKHEHSGEPT---------HDELAAKIK 681
            |.::...|.|.:|||.:         ||         ..|...|:.|         .|.....:.
Zfish  1922 ISQDDVPELDKTFKVRL---------TN---------ASHGRLGKETTATLTVLASDDPYGLFVF 1968

  Fly   682 EVEKKPVQDLTELDRILLLSKPRN----GELTTAYVRIR----------------ESQEFKATVD 726
            ....:||. :.|.:.::.|:..|.    |.:..||..:|                |..:|.|.||
Zfish  1969 SDNTRPVH-VAEANALVALTIQRRKGLMGRVRVAYRTLRDTDTAPYSTPGVGRASEGNDFIAVVD 2032

  Fly   727 KLVAKANVSAVLGTSSWKEQFKDALTVIPADESEFDNDDEEEEVPSCF 774
            .::..||.|.|..|          |.|:        :|:|.|...|.|
Zfish  2033 SVIFSANQSEVNVT----------LRVL--------DDNEPERAESVF 2062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalxNP_001247215.1 caca 4..973 CDD:273296 113/438 (26%)
Na_Ca_ex 126..297 CDD:279963
Na_Ca_ex_C 300..414 CDD:293103
Calx_beta 441..529 CDD:197594 29/95 (31%)
Calx_beta 554..643 CDD:197594 34/100 (34%)
Na_Ca_ex 800..965 CDD:279963
adgrv1XP_009300028.1 Calx-beta 138..230 CDD:295344
Calx-beta 256..355 CDD:295344
Calx-beta 766..853 CDD:295344
Calx-beta 880..971 CDD:295344
Calx-beta 996..1082 CDD:295344
Laminin_G_3 1343..1484 CDD:290121
Calx-beta 1576..1654 CDD:295344
Calx-beta 1712..1794 CDD:295344 26/84 (31%)
Calx-beta 1849..1939 CDD:295344 34/108 (31%)
Calx-beta 1975..2065 CDD:295344 25/107 (23%)
Calx-beta 2105..2193 CDD:295344
Calx-beta 2220..2310 CDD:295344
Calx-beta 2590..2656 CDD:295344
Calx-beta 2951..3039 CDD:295344
Calx-beta <3574..3614 CDD:295344
Calx-beta 3641..3729 CDD:295344
Calx-beta <3788..3864 CDD:295344
Calx-beta 4021..4112 CDD:295344
Calx-beta 4257..4345 CDD:295344
Calx-beta 4390..4480 CDD:295344
Calx-beta 5003..5085 CDD:295344
7tm_4 <5871..>5926 CDD:304433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1306
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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