DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Calx and Frem2

DIOPT Version :9

Sequence 1:NP_001247215.1 Gene:Calx / 42481 FlyBaseID:FBgn0013995 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001232907.1 Gene:Frem2 / 310418 RGDID:1566012 Length:3158 Species:Rattus norvegicus


Alignment Length:511 Identity:108/511 - (21%)
Similarity:194/511 - (37%) Gaps:122/511 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 FEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGR-KGLLSFPPGVDEQRF 509
            ||..:|.:.|:....::.:.|||.:...:.:...|:||||....||.|: :..:.|.||.....:
  Rat  1760 FEKEYYLINEDSKFLDIVLKRRGYLGETSFISISTRDGTAEKDKDFKGKAQKQVQFNPGQTRASW 1824

  Fly   510 RIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESVGRF 573
            |:.::.|...|..|.|.:.|..|...| |..|.:.||.|:| .|.:.:| ...|.:.:.|.|...
  Rat  1825 RVRILSDGEHEHSETFQVVLSEPVLAV-LEFPEVTTVEIIDPGDESTVF-IPQSEYSVEEDVSEL 1887

  Fly   574 ELKVMRYSGARGTVIVPYWTENDTATES--------KDY----EGARGELVFENNESEKFIDLFI 626
            .:.:.|.......::|..:|:..|||.:        .||    |.....:.|:.:|.||...:.:
  Rat  1888 FIPIRRSGDISQELMVICYTQQGTATSTVRTSVLSYSDYISRPEDHSSVIRFDKDEREKMCRVVV 1952

  Fly   627 LEESSYEKDVSFKVHIGEP--------------RLAPDDTNKESFFNRFFEKHEHSGEPTHDELA 677
            :::|.||::.:|:|.:..|              .:..|..::.:|   :|...:||    .||.|
  Rat  1953 IDDSLYEEEETFQVLLSMPMGGRIGNKFPGANVTILTDKDDEPAF---YFGDTQHS----VDESA 2010

  Fly   678 AKIKEVEKKPVQDLTELDRILLLSK---PRNGELTTAYVRIRESQEFKATVD------------- 726
            ..::....:...|||:...:.:.|:   |.:.:..|.||.|..:.:|...|.             
  Rat  2011 GYVEVQVWRTGTDLTKPSSVTVRSRKTEPPSADAGTDYVGISRNLDFAPGVSMQTVRVVILDDLG 2075

  Fly   727 ----------KLVAKANVSAVLGTSSWKEQFKDALTVIPADESEFDNDDEEEEVPSCFSYVSHFV 781
                      :||.:..::|.||..|      .|...|....|:......:|.|.:|.....|.|
  Rat  2076 RPVLEGIEKFELVLRMPMNAALGEPS------KATVSINDSASDLPKMQFKERVYTCSENDGHVV 2134

  Fly   782 CLFWK--------------------VLFAFV--PPTDICGGYVTFVVSIFVIGVITAIIGDAASY 824
            .:.::                    |:..|.  |.||              |.::|.:.|::.. 
  Rat  2135 AMIYRSGDLQHRSSVRCYTRQGSAQVMMDFEERPNTD--------------ISIVTFLPGESEK- 2184

  Fly   825 FGCALNIKD-----SVTAILFV--------ALGTSIPDTFASMIAAKHDEGADNCI 867
             .|.|.:.|     .|..:..|        |.|.::.:...::|..:.|  ||..:
  Rat  2185 -PCVLELMDDDLYEDVEELRLVLGTPQGSSAFGAAVGEQNETLIKIQDD--ADKAV 2237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalxNP_001247215.1 caca 4..973 CDD:273296 108/511 (21%)
Na_Ca_ex 126..297 CDD:279963
Na_Ca_ex_C 300..414 CDD:293103
Calx_beta 441..529 CDD:197594 23/83 (28%)
Calx_beta 554..643 CDD:197594 22/100 (22%)
Na_Ca_ex 800..965 CDD:279963 14/81 (17%)
Frem2NP_001232907.1 Cadherin_3 374..530 CDD:292802
Cadherin_3 498..663 CDD:292802
Cadherin_3 632..795 CDD:292802
Cadherin_3 761..907 CDD:292802
Cadherin_3 877..1024 CDD:292802
Cadherin_3 991..1157 CDD:292802
Cadherin_3 1123..1271 CDD:292802
Cadherin_3 1239..1388 CDD:292802
Cadherin_3 1357..1501 CDD:292802
Cadherin_3 1469..1610 CDD:292802
Cadherin_3 1579..1740 CDD:292802
Calx-beta 1758..1845 CDD:295344 23/84 (27%)
Calx-beta 1869..1969 CDD:295344 22/100 (22%)
Calx-beta 1997..2089 CDD:295344 19/98 (19%)
Calx-beta 2115..2207 CDD:295344 18/107 (17%)
Calx-beta 2237..2328 CDD:295344 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1306
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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