DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Calx and Fras1

DIOPT Version :9

Sequence 1:NP_001247215.1 Gene:Calx / 42481 FlyBaseID:FBgn0013995 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_038947596.1 Gene:Fras1 / 289486 RGDID:1306516 Length:4014 Species:Rattus norvegicus


Alignment Length:535 Identity:113/535 - (21%)
Similarity:200/535 - (37%) Gaps:92/535 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 EAIVTLLFFPLTVLWAYIAERRLLV--------YKYMDKNYRVNK-RGTVVAGEHDQVEMDAEKG 335
            |:....|..|...|.....:.::::        .::..|.||||: .|.:.|....|.:..:...
  Rat  2645 ESFTVELSMPAYALLGEFTQAKVIINDTEDEPTLEFDKKTYRVNESAGFLFAPIKRQGDPSSAVS 2709

  Fly   336 ------PKQPMVTS----ARGNDAEAFDEARREYITLLTELRQKYPDA----DLEQLEMMAQEQV 386
                  ||..|.:|    ..|:|.::...:....:.|...:.....|.    |.|..|....|..
  Rat  2710 AICYTVPKSAMGSSLYALESGSDFKSRGRSVESRVLLGPGVTTSTCDVMVIDDSEYEEEEEFEIA 2774

  Fly   387 LARSSKSRAFYRIQATRKMVGSGNLMRKIQERAHSDLTEVKAQLHAGDDEEADDPIRMYFEPGHY 451
            ||.:|.:....|:...:.::...|           |.:.|.....|                  :
  Rat  2775 LADASNNARIGRLAVAKVLISGPN-----------DASTVSLGNTA------------------F 2810

  Fly   452 TVMENCGEFEVRVVRRG-DISTYASVEYETQ---DGTASAGTDFVGRKGLLSFPPGVDEQRFRIE 512
            |:.|:.|..:|.|:|.| |:||:.||...|:   ..:|:.|.|:|.....:.|.|||.||...:.
  Rat  2811 TISEDAGTVKVPVIRHGTDLSTFTSVWCATRPSDPASATPGVDYVPSSRKVEFGPGVTEQYCTLT 2875

  Fly   513 VIDD---DVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDD-DHAGIFAFTDSVFEITESVGRF 573
            ::||   .|.|..|.|.:.| :.::|.:|..|..|.:.|.|. .......|:..:..:.|..|..
  Rat  2876 ILDDTQYPVIEGLETFVVFL-SSAQGAELTKPSQAVIAINDTFQDVPSMQFSKDLLLVKEKEGVL 2939

  Fly   574 ELKVMRYSGARGTVIVPYWTENDTATESKDYEGAR----GELVFENNESEKFIDLFILEESSYEK 634
            .:.::|.........|..:|::.:|...:|:|..|    ..:.|...|..|...::|.::|.:|.
  Rat  2940 HIPIIRSGDLSYESSVRCYTQSHSAQVMEDFEERRNADSSRITFLKGEKAKNCTVYIHDDSMFEP 3004

  Fly   635 DVSFKVHIGEP--------RLAPDD------TNKESFFNRFFEKHEHS-GEPTHDELAA--KIKE 682
            :..|:|::|.|        |:..:.      :|.|......||:..|. .||...:..|  .:|.
  Rat  3005 EEQFRVYLGHPLGNHWSGARIGKNSMATVTISNDEDAPTIEFEEAAHQVREPAGPDATAVLSVKV 3069

  Fly   683 VEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRESQEFKATVDKLVAKANVSAVLGTS--SWKE 745
            :.:   .|.....:|...::..:.:....|.......:|...||.:..|..   :|...  .|.|
  Rat  3070 IRR---GDQNRTSKIRCSTRDGSAQSGVDYYPKSRVLKFSPGVDHIFFKVE---ILSNEDREWHE 3128

  Fly   746 QFKDALTVIPADESE 760
            .|  :|.:.|.|..|
  Rat  3129 SF--SLVLGPDDPVE 3141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalxNP_001247215.1 caca 4..973 CDD:273296 113/535 (21%)
Na_Ca_ex 126..297 CDD:279963 4/16 (25%)
Na_Ca_ex_C 300..414 CDD:293103 25/136 (18%)
Calx_beta 441..529 CDD:197594 29/94 (31%)
Calx_beta 554..643 CDD:197594 18/92 (20%)
Na_Ca_ex 800..965 CDD:279963
Fras1XP_038947596.1 VWC 27..86 CDD:214564
VWC 94..151 CDD:278520
VWC 158..>198 CDD:327433
VWC 224..277 CDD:278520
VWC 284..341 CDD:214564
VWC 368..415 CDD:327433
VSP 405..780 CDD:146106
VSP 728..1059 CDD:146106
FU 1045..1086 CDD:214589
Cadherin_3 1101..1197 CDD:406568
Cadherin_3 1202..1309 CDD:406568
Cadherin_3 1313..1440 CDD:406568
Cadherin_3 1448..1576 CDD:406568
Cadherin_3 1579..1693 CDD:406568
Cadherin_3 1703..1813 CDD:406568
Cadherin_3 1822..1940 CDD:406568
Cadherin_3 1943..2061 CDD:406568
Cadherin_3 2081..2181 CDD:406568
Cadherin_3 2188..2295 CDD:406568
Cadherin_3 2297..2408 CDD:406568
Cadherin_3 2427..2539 CDD:406568
Calx-beta 2555..2652 CDD:413355 1/6 (17%)
Calx-beta 2677..2763 CDD:413355 16/85 (19%)
caca <2782..>3049 CDD:273296 66/296 (22%)
Calx-beta 3041..3135 CDD:413355 19/101 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1306
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.