DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Calx and fras1

DIOPT Version :9

Sequence 1:NP_001247215.1 Gene:Calx / 42481 FlyBaseID:FBgn0013995 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_002935497.2 Gene:fras1 / 100487299 XenbaseID:XB-GENE-478807 Length:4014 Species:Xenopus tropicalis


Alignment Length:549 Identity:122/549 - (22%)
Similarity:208/549 - (37%) Gaps:113/549 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   427 KAQLHAGDDEEADDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTA------ 485
            ||.::..|.|  |:| .:.||...|...|:.|...|.:.|:||.::..|....|...:|      
 Frog  2666 KATVNINDTE--DEP-TLKFEKKIYRANESAGLLSVPIERKGDPASIVSAICYTVPKSAKGSSFY 2727

  Fly   486 --SAGTDFVGR----KGLLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIA 544
              .:|:||..|    :..:.|.|||......:::|||..:||:|.|.|.|.:.||..::....:|
 Frog  2728 ALESGSDFKSREMSNENRIIFGPGVTMSTCDVKLIDDSEYEEEEEFEIALADTSENARVGEIAVA 2792

  Fly   545 TVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYW-----TENDTATESKDY 604
            .::|...:.|...:..::.|.::|..|..|:.|:| ||...:|....|     ::..:||...||
 Frog  2793 KIVIEGPNDASTVSLGNATFTVSEDAGSVEIPVIR-SGPDLSVPTSVWCATRPSDPSSATPGIDY 2856

  Fly   605 EGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDTNKESFFNRFFEKHEHSG 669
            ..:..::.|...::.::..|.|::::.:                |.....|:|.  .|.......
 Frog  2857 VPSSKKIEFRAGKTIEYCTLTIMDDTQH----------------PMIEGLETFV--VFLSSAQGA 2903

  Fly   670 EPTHDELAA-----KIKEVEK----KPVQDLTELDRILLLSKPRNGELT-TAYVRIRESQEFKAT 724
            |.|....|.     .:::|..    |.|..:.|.|.:|.:...|.|:|: .:.||.....:....
 Frog  2904 ELTKPFQATVTINDTVQDVPSMQFGKEVFTVKEKDGVLHVPVLRTGDLSYESSVRCYTQSQTARV 2968

  Fly   725 VDKLVAKANV--SAVLGTSSWKEQFKDALTVIPADESEFDNDDEEEEVPSCFSYVSHFVCLFWKV 787
            :|....:.|.  |.::....  |:.|:. ||:..|:|.|:.:::.:      .|:|:.:...|. 
 Frog  2969 MDDFEERRNSDDSRIIFLKG--EKVKNC-TVLINDDSVFEPEEQFK------IYLSNPLGSHWS- 3023

  Fly   788 LFAFVPPTDICGGYVTFVVSIFVIGVITAIIGDAASYFGCALNIKDSVTAILFVALGTSI----- 847
             .|.....||    .|..:|                      |.:|:.| |.|......|     
 Frog  3024 -GARTGKNDI----ATITIS----------------------NDEDAPT-IEFEEATYQIREPQE 3060

  Fly   848 PDTFASMIAAKHDEGADNCIGNVTGSNAVNVFLGIGLAWTIAAVYHSSHGMTFNVEPGT--IGFA 910
            ||..|.:......:|..|....|..|..      .|.|.:....|..|..:.|:  ||.  |.|.
 Frog  3061 PDGVAILNIKVIRKGDQNRTSKVRCSTR------DGSAQSGVDYYPKSRVLKFS--PGVDHILFK 3117

  Fly   911 VALFCGEALIAIMLIMFRRWHKGIGAELG 939
            |.:...|.         |.||:.....||
 Frog  3118 VEILSNED---------REWHESFSLVLG 3137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalxNP_001247215.1 caca 4..973 CDD:273296 122/549 (22%)
Na_Ca_ex 126..297 CDD:279963
Na_Ca_ex_C 300..414 CDD:293103
Calx_beta 441..529 CDD:197594 29/99 (29%)
Calx_beta 554..643 CDD:197594 18/93 (19%)
Na_Ca_ex 800..965 CDD:279963 31/147 (21%)
fras1XP_002935497.2 VWC 37..96 CDD:278520
VWC 104..161 CDD:278520
VWC 168..225 CDD:278520
VWC 230..287 CDD:278520
VWC 294..351 CDD:327433
VWC 380..426 CDD:214564
VSP 406..789 CDD:146106
VSP 649..1031 CDD:146106
FU 1011..1057 CDD:238021
Cadherin_3 1105..1206 CDD:374418
Cadherin_3 1210..1315 CDD:374418
Cadherin_3 1321..1443 CDD:374418
Cadherin_3 1450..1578 CDD:374418
Cadherin_3 1597..1695 CDD:374418
Cadherin_3 1697..1814 CDD:374418
Cadherin_3 1821..1942 CDD:374418
Cadherin_3 1945..2063 CDD:374418
Cadherin_3 2071..2182 CDD:374418
Cadherin_3 2189..2297 CDD:374418
Cadherin_3 2301..2410 CDD:374418
Cadherin_3 2429..2541 CDD:374418
caca <2557..>2807 CDD:273296 40/143 (28%)
Calx-beta 2557..2654 CDD:367364
caca <2800..>3051 CDD:273296 59/307 (19%)
Calx-beta 3043..3137 CDD:383005 25/111 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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