DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and GLR2.1

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_198062.2 Gene:GLR2.1 / 832768 AraportID:AT5G27100 Length:901 Species:Arabidopsis thaliana


Alignment Length:995 Identity:198/995 - (19%)
Similarity:391/995 - (39%) Gaps:232/995 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LGFILTSLLLAFPGCRGE------RTNVGLV------YENTDPDLEKIFHLAISKANEENEDLQL 67
            |.|::..|:..     ||      ..|||:|      |.|.   .....::::|.....:.:.|.
plant    12 LFFVIVFLMQV-----GEAQNRITNVNVGIVNDIGTAYSNM---TLLCINMSLSDFYSSHPETQT 68

  Fly    68 HGVSVSIEPGNSFET--SKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLDTRWDFGAQ 130
            ..|:..::..|...|  :..|..:..:.:.|:.||.:::.|:..:.:....::|.:    .:.|.
plant    69 RLVTTVVDSKNDVVTAAAAALDLITNKEVKAILGPWTSMQAQFMIEMGQKSQVPIV----TYSAT 129

  Fly   131 LPTI-----------------NLHPHPATLGVALRDMVVALGWESFTIIYESGEY----LPTVRE 174
            .|::                 .:|        |:::::...||.....:|....:    :|.:.:
plant   130 SPSLASIRSQYFFRATYDDSSQVH--------AIKEIIKLFGWREVAPVYVDDTFGEGIMPRLTD 186

  Fly   175 LLQMYGTAGPTVTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLP--------------E 225
            :||              |:::...||.|:......|:.| |.:..|.|||              .
plant   187 VLQ--------------EINVRIPYRTVISPNATDDEIS-VELLRMMTLPTRVFVVHLVELLASR 236

  Fly   226 FFKQAQQVGLVTSDYRYIIGNLDWHTM------DLEPYQHAGTNITGLRLVSPDSEQVQEVAKAL 284
            ||.:|.::||:...|.:|:.|.....:      ::|..|    .:.|::...|.|::::.. ::.
plant   237 FFAKATEIGLMKQGYVWILTNTITDVLSIMNETEIETMQ----GVLGVKTYVPRSKELENF-RSR 296

  Fly   285 YESEEPFQNVSCPLTNSMAL-VYDGVQLLAETYKHV---NFRPVALSCNDDSAWDKGYTLVNYMK 345
            :....|..::     |...| .||....||...:..   |...|.:....:.:..:|..:..|..
plant   297 WTKRFPISDL-----NVYGLWAYDATTALALAIEEAGTSNLTFVKMDAKRNVSELQGLGVSQYGP 356

  Fly   346 SL--TLNGLTGPIRFDYEGLRTDFK----------LEVIELAVSGMQKIGQWSGEDGFQEN---R 395
            .|  ||:      |..::||..||:          .|::.:...|.:.||.|..|.|..:|   :
plant   357 KLLQTLS------RVRFQGLAGDFQFINGELQPSVFEIVNVNGQGGRTIGFWMKEYGLFKNVDQK 415

  Fly   396 PAPAHSLE-----------PDMRSLVNKSFVVIT-----AISEPYG-----MLKETSEKLEGNDQ 439
            ||...:..           |...:.|.|.:.:.|     .|..|..     .:|.|.:.:..:..
plant   416 PASKTTFSSWQDRLRPIIWPGDTTSVPKGWEIPTNGKRLQIGVPVNNTFQQFVKATRDPITNSTI 480

  Fly   440 FEGFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSER 504
            |.||.|:..:.:.:.:.:        |..|..|..:.|.::.::.::...:.|..:.|.|::|.|
plant   481 FSGFSIDYFEAVIQAIPY--------DISYDFIPFQDGGYDALVYQVYLGKYDAVVADTTISSNR 537

  Fly   505 ESGVDFTIPFMSLGIGILFRKPMKEPPKLFS--FMSPFSGEVWLWLGLAYMGVSISMFVL-GRLS 566
            ...|||::|:...|:|::.  |:|:..:..|  |:.|.:..:||...|::..:.:.::|| .|::
plant   538 SMYVDFSLPYTPSGVGLVV--PVKDSVRRSSTIFLMPLTLALWLISLLSFFIIGLVVWVLEHRVN 600

  Fly   567 PAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPK----AYSTRAVAASWWFFTLI 627
            | ::|.|           .|:..:...|||...::     .||:    ::..|.|...|:|..|:
plant   601 P-DFDGP-----------GQYQLSTIFWFSFSIMV-----FAPRERVLSFWARVVVIIWYFLVLV 648

  Fly   628 LVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAK--IGGATFNFFKESNYPTYQRMYEF 690
            |..||||:||:.||.:.|...:.:.:.|......|.|.:.  :|....:.|.|::..:|      
plant   649 LTQSYTASLASLLTTQHLHPTVTNINSLLAKGESVGYQSSFILGRLRDSGFSEASLVSY------ 707

  Fly   691 MRDNPQYMTNTNQEGVDRVENSNYAFLMESTTIEYITERRCT---LTQVGALLDEKGYGIAMRKN 752
              .:|::......:|  :.|....|.|||...:.....:.|.   :.|....:|  |.|......
plant   708 --GSPEHCDALLSKG--QAEGGVSAVLMEVPYVRIFLGQYCNKYKMVQTPFKVD--GLGFVFPIG 766

  Fly   753 WPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSD--ADEDSGAVALEISNLGGVFLVMGV 815
            .|....:|:|:|:::|.....:::..|:  |....:|.|  .:.|        .|....|..:|.
plant   767 SPLVADISRAILKVEESNKANQLENAWF--KPIDESCPDPLTNPD--------PNPSVSFRQLGF 821

  Fly   816 GSFFGIF--------VSLLEMVLG-VKERSDENQVSFKTELLDE------IRFILQC---SGNTK 862
            .||:.:|        ::||:.|.. :||..::..:....|..:|      |:.:.:|   ||.  
plant   822 DSFWVLFLVAAIVCTMALLKFVYQFLKENPNQRNLRVLWEKFNEPDQKSYIKDVTKCQCSSGQ-- 884

  Fly   863 AVKYPKNSSRSNASSKSKGS 882
              ..||| .:..|::.:.|:
plant   885 --GMPKN-GQEGANAVNNGN 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 74/418 (18%)
ANF_receptor 53..374 CDD:279440 65/379 (17%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 85/391 (22%)
Lig_chan 543..816 CDD:278489 62/284 (22%)
GLR2.1NP_198062.2 PBP1_GABAb_receptor 49..411 CDD:107361 71/404 (18%)
ANF_receptor 49..392 CDD:279440 65/385 (17%)
GluR_Plant 452..794 CDD:270404 82/380 (22%)
Periplasmic_Binding_Protein_Type_2 478..>685 CDD:304360 56/233 (24%)
Lig_chan 576..835 CDD:278489 65/297 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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