DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and GLR3.5

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001324013.1 Gene:GLR3.5 / 817800 AraportID:AT2G32390 Length:953 Species:Arabidopsis thaliana


Alignment Length:1012 Identity:225/1012 - (22%)
Similarity:389/1012 - (38%) Gaps:189/1012 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWFVKMISTEASFPLGFILTSL----LLAFPGCRGE-------------RTNVGLVYENTDPDLE 48
            |.|..||   ....:||:|..:    :|...|...|             ..|||.:: ..|..:.
plant     1 MGFFVMI---RDVSMGFMLLCISALWVLPIQGAGRESFSRNSSSSSLPSSVNVGALF-TYDSFIG 61

  Fly    49 KIFHLAISKANEE-NEDLQ-LHGVSVSI--EPGN--SFETSKKLCKMLRQNLVAVFGPTSNLAAR 107
            :...||...|.|: |.|.. |.|..::|  :..|  .|..:....:::...:||..||.|:....
plant    62 RAAKLAFVAAIEDINADQSILRGTKLNIVFQDTNCSGFVGTMGALQLMENKVVAAIGPQSSGIGH 126

  Fly   108 HAMSICDAKELPFLDTRWDFGAQLPTINLHPHPATLGV---------ALRDMVVALGWESFTIIY 163
            ....:.:...:|||    .|.|..||::...:|..|..         |:.|.|....|.....|:
plant   127 IISHVANELHVPFL----SFAATDPTLSSLQYPYFLRTTQNDYFQMNAITDFVSYFRWREVVAIF 187

  Fly   164 ESGEYLPTVRELLQMYGTAGPTVTVRRYELDL---------NGNYRNVLRRIRNADDFSFVVVGS 219
            ...||   .|..:.:.|.|   :..:|.::..         |.:..::|..:...:...|||..:
plant   188 VDDEY---GRNGISVLGDA---LAKKRAKISYKAAFPPGADNSSISDLLASVNLMESRIFVVHVN 246

  Fly   220 MATLPEFFKQAQQVGLVTSDYRYIIGNLDW--HTMD-LEPYQHAGTN----ITGLRLVSPDSEQV 277
            ..:....|..|:.:|::.|.|.:|  ..||  ..:| :||......:    :...|..:|:|:..
plant   247 PDSGLNIFSVAKSLGMMGSGYVWI--TTDWLLTALDSMEPLDPRALDLLQGVVAFRHYTPESDNK 309

  Fly   278 QEVA--------KALYESEEPFQNVSCPLTNSMAL-VYDGVQLLAETY-------KHVNFR--PV 324
            ::..        |...:|::.|        ||.|| .||.|.|:|...       ..|.|.  |.
plant   310 RQFKGRWKNLRFKESLKSDDGF--------NSYALYAYDSVWLVARALDVFFSQGNTVTFSNDPS 366

  Fly   325 ALSCNDDS-------AWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVIELAVSGMQKI 382
            ..:.||..       .:::|...:..:..:...||||.|.|:.|..|.:...:::.:..:|..::
plant   367 LRNTNDSGIKLSKLHIFNEGERFLQVILEMNYTGLTGQIEFNSEKNRINPAYDILNIKSTGPLRV 431

  Fly   383 GQWSGEDGFQENRP-----APAHSLEPDMRSLVNKSFVVITAISEPYGML--------------- 427
            |.||...||....|     .|:::...|.|  :|:.......|..|.|.:               
plant   432 GYWSNHTGFSVAPPETLYSKPSNTSAKDQR--LNEIIWPGEVIKPPRGWVFPENGKPLKIGVPNR 494

  Fly   428 ---KETSEKLEGNDQFEGFGIELIDELSKKLGFSY--TWRLQEDNKYGGIDPKTGEWNGMLREII 487
               |..:.|.:.....:||.|::.:...:.|.:..  |:.|..|.|      |...::.::.|:.
plant   495 VSYKNYASKDKNPLGVKGFCIDIFEAAIQLLPYPVPRTYILYGDGK------KNPSYDNLISEVA 553

  Fly   488 DSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFR-KPMKEPPKLFSFMSPFSGEVWLWLGLA 551
            .:..|:.:.|:|:.:.|...||||.||:..|:.::.. |..|..|  :||:.||:.|:|...|..
plant   554 ANIFDVAVGDVTIITNRTKFVDFTQPFIESGLVVVAPVKGAKSSP--WSFLKPFTIEMWAVTGAL 616

  Fly   552 YMGVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYST-- 614
            ::.|...:::|......|:..|      |..     ......|||...:.....|   ...||  
plant   617 FLFVGAVIWILEHRFNEEFRGP------PRR-----QIITVFWFSFSTMFFSHRE---NTVSTLG 667

  Fly   615 RAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKES 679
            |.|...|.|..||:.|||||:|.:.|||:.|.:.|...|.|..:...:  |.:.|...:.|....
plant   668 RFVLLVWLFVVLIINSSYTASLTSILTVQQLTSRIEGMDTLIASNEPI--GVQDGTFAWKFLVNE 730

  Fly   680 NYPTYQRMYEFMRDNPQYMTNTNQEGVDRVENSNYAFLMESTTIEYI----TERRCTLTQVGALL 740
            ......|:.. ::|..:|: :..|.|   ......|.:::.  :.||    :...|....||...
plant   731 LNIAPSRIIP-LKDEEEYL-SALQRG---PRGGGVAAIVDE--LPYIKALLSNSNCKFRTVGQEF 788

  Fly   741 DEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISN 805
            ...|:|.|.:::.|....:|.|:|::.|:|.|.|::.||.....   .|:....|:....:.:.:
plant   789 TRTGWGFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDH---ECTMQISDTENYQISVQS 850

  Fly   806 LGGVFLVMGVGSFFGIFVSLLEMVLGVK----ERSDENQ----------------VSFKTELLDE 850
            ..|:||:.||..|..:.:...::....:    |.|||.|                ||||    |.
plant   851 FWGLFLICGVVWFIALTLFCWKVFWQYQRLRPEESDEVQARSEEAGSSRGKSLRAVSFK----DL 911

  Fly   851 IRFILQCSGNTKAVKYPKNSSRSNASSKSKGSSMSVD 887
            |:.:.:.....|.:...|:|.:......|..:|.|.|
plant   912 IKVVDKREAEIKEMLKEKSSKKLKDGQSSAENSQSKD 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 87/409 (21%)
ANF_receptor 53..374 CDD:279440 81/376 (22%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 94/396 (24%)
Lig_chan 543..816 CDD:278489 66/278 (24%)
GLR3.5NP_001324013.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.920

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