DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and GLR2.2

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_180048.1 Gene:GLR2.2 / 817008 AraportID:AT2G24720 Length:920 Species:Arabidopsis thaliana


Alignment Length:984 Identity:195/984 - (19%)
Similarity:386/984 - (39%) Gaps:187/984 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FILTSLLLAFPGCRGE-----RTNVGLVYE--NTDPDLEKI-FHLAISKANEENEDLQLH-GVSV 72
            |:...........||:     :.|:|:|.:  .:.||:..: .:::::.........|.. .|:|
plant    10 FLFLFFFFCLESSRGQDNGKTQVNIGVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNV 74

  Fly    73 SIEPGNSFETSKKLCKMLRQNLV-AVFGPTSNLAARHAMSICDAKELPFLDTRWDFGAQLPTINL 136
            .....:....:.....:::...| |:.||.:::.|...:.|.....:|.:    .:.|..|::..
plant    75 GDSKNDVVGAATAAIDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPVV----SYSATSPSLTS 135

  Fly   137 HPHP---------ATLGVALRDMVVALGWESFTIIYESGEY----LPTVRELLQMYGTAGPTVTV 188
            ...|         ::...|::.::...||.....:|....:    :|.:.:.||       .:.|
plant   136 LRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDSLQ-------DINV 193

  Fly   189 R---RYELDLNGNYRNV---LRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNL 247
            |   |..:.||...:::   |.::.|.....|:|..|.:.....|.:|:::||:...|.:|:.| 
plant   194 RIPYRSVIPLNATDQDISVELLKMMNMPTRVFIVHMSSSLASTVFIKAKELGLMKPGYVWILTN- 257

  Fly   248 DWHTMD-LEPYQHAG----TNITGLRLVSPDSEQVQEVAKALYESEEPFQNVSCPLTNSMAL-VY 306
              ..|| |......|    ..:.|::...|.|:.: |..::.::...|...:     |...| .|
plant   258 --GVMDGLRSINETGIEAMEGVLGIKTYIPKSKDL-ETFRSRWKRRFPQMEL-----NVYGLWAY 314

  Fly   307 DGVQLLAETYKHVNFRPVALSCNDDSAWDK-----------GYTLVNYMKSLTLNGLTGPIRFDY 360
            |....||...:......:..| |.|:..:.           |..|:..:.::...||.|...| .
plant   315 DATTALAMAIEDAGINNMTFS-NVDTGKNVSELDGLGLSQFGPKLLQTVSTVQFKGLAGDFHF-V 377

  Fly   361 EGLRTDFKLEVIELAVSGMQKIGQWSGEDGF-----QENRPAPAHSLEPD-MRSLVNKSFVVITA 419
            .|.......|::.:..:|.:.||.|:..:|.     ||.|.....|..|| ::.::...    .|
plant   378 SGQLQPSVFEIVNMIGTGERSIGFWTEGNGLVKKLDQEPRSIGTLSTWPDHLKHIIWPG----EA 438

  Fly   420 ISEPYG----------------------MLKETSEKLEGNDQFEGFGIELIDELSKKLGFSYTWR 462
            :|.|.|                      ::|.|.:.:..:...:||.|:..:.:.:.:.:..::.
plant   439 VSVPKGWEIPTNGKKLRIGVPKRIGFTDLVKVTRDPITNSTVVKGFCIDFFEAVIQAMPYDVSYE 503

  Fly   463 LQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRKPM 527
            .....|..| :| .|..|.::.::...:.|..:.|.|:.:.|.|.||||:|||..|:|::.  |:
plant   504 FFPFEKPNG-EP-AGNHNDLVHQVYLGQFDAVVGDTTILANRSSFVDFTLPFMKSGVGLIV--PL 564

  Fly   528 KEPPK--LFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFA 590
            |:..|  .|||:.|.|.|:||...:.:..|.||::.|.....:::..|           ..:..:
plant   565 KDEVKRDKFSFLKPLSIELWLTTLVFFFLVGISVWTLEHRVNSDFRGP-----------ANYQAS 618

  Fly   591 NCLWFSIGALLQQGSELAPK----AYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPIND 651
            ...||:...::     .||:    ::..|::..:|:|..|:|..||||:||:.||.:.|...|..
plant   619 TIFWFAFSTMV-----FAPRERVLSFGARSLVVTWYFVLLVLTQSYTASLASLLTSQQLNPTITS 678

  Fly   652 ADDLSKNKGGVNYGAKIGGATFNF----FKESNYP--------TYQRMYEFMRDNPQYMTNTNQE 704
            ...|      ::.|..:|....:|    ..|:.:|        |.:...|.::..|:      ..
plant   679 MSSL------LHRGETVGYQRTSFILGKLNETGFPQSSLVPFDTAEECDELLKKGPK------NG 731

  Fly   705 GVDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQ 769
            ||..      |||.......::.:...|...|....:..|:|.......|....:|:|:|::.|.
plant   732 GVAA------AFLGTPYVRLFLGQYCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAILKVAES 790

  Fly   770 GLLTKMKTKWWQEKRGGGACSD--ADEDSGAVALEISNLGGVFLVMGVGSFFGIF-VSLLEMVLG 831
            ....:::..|:::|.  .:|.|  .:.||......|.        :|||||:.:| |..:..||.
plant   791 PKAVELEHAWFKKKE--QSCPDPVTNPDSNPTVTAIQ--------LGVGSFWFLFLVVFVVCVLA 845

  Fly   832 VKERSDENQVSFKTELLDEIRFILQCSGNTKAVKYPKNSSRSNASSKSKGSSMSVDSLPEDTSEA 896
            :      .:.:|        .|:.:..|.....::.|..:.|..:...|  .:....:||:::: 
plant   846 L------GKFTF--------CFLWKTKGKDLWKEFLKRDTDSYINDIEK--CLCSQEMPENSNK- 893

  Fly   897 DASGKHNHG 905
             |:.:.|:|
plant   894 -ATNQTNYG 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 71/394 (18%)
ANF_receptor 53..374 CDD:279440 63/358 (18%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 87/409 (21%)
Lig_chan 543..816 CDD:278489 58/290 (20%)
GLR2.2NP_180048.1 PBP1_GABAb_receptor 33..412 CDD:107361 73/400 (18%)
ANF_receptor 47..392 CDD:279440 63/366 (17%)
HisJ 438..>587 CDD:223904 39/152 (26%)
GluR_Plant 452..801 CDD:270404 82/386 (21%)
Lig_chan 582..819 CDD:278489 56/272 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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