DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and grik5-like.1

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5-like.1 / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:483 Identity:169/483 - (34%)
Similarity:263/483 - (54%) Gaps:50/483 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 KSFVVITAISEPYGMLKETSEKLEGNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKT 476
            |...|.|.:.:|:.|..|:.        .|||.|:|:.||::.|||:||.:..:|.:||..| :.
 Frog    41 KHLTVTTIMEQPFSMKTESG--------MEGFCIDLLSELAQSLGFNYTIKEVKDGRYGAKD-QD 96

  Fly   477 GEWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRK-PMKEPPKLFSFMSPF 540
            |.||||:.|::...||:.:..||:|..||..:.||.|||..||.||.|| .:.|...||.|::||
 Frog    97 GNWNGMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISILLRKDDVSENSYLFGFLTPF 161

  Fly   541 SGEVWLWLGLAYMGVSISMFVLGRLSPAEWDNPYPCIEEPTEL---ENQFSFANCLWFSIGALLQ 602
            |.|.|:.:.:||:..|:.:|::|||||.||          |||   :|.|:|.|.|||.:||...
 Frog   162 SKETWIGILVAYVVTSLCLFLVGRLSPCEW----------TELSTEQNNFNFLNSLWFGVGAFTL 216

  Fly   603 QGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESL-VTPINDADDLSKNKGGVNYGA 666
            ||:|..||:.|.|.:|..||.|:::||::|.|:.||||..:|: .|.|...:|| .|:..:.:|.
 Frog   217 QGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTNIQTFEDL-VNQRTLEFGT 280

  Fly   667 KIGGATFNFFKESNYPTYQRMYEFM-RDNPQYMTNTNQEGVDRVENSNYAFLMESTTIEYITERR 730
            ....:||.|||.|..|||:.:||:| :...:.:..:..|||.||:.||||||.||...:.:..:.
 Frog   281 INSSSTFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVKESNYAFLGESVMQDIMVAKH 345

  Fly   731 CTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADED 795
            |.|.:...::..:|||||...:.|....||.|:||..|.|.:..::.|||.     ..| :....
 Frog   346 CDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKWWD-----NTC-NMKRS 404

  Fly   796 SGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMVLGVKERSDENQVSFKTELLDEIRFILQCSGN 860
            :|...::...|||:||::|:|...|:..:|:|:||..:..:|:.:.|..:...:|:         
 Frog   405 AGWNPVQPHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQKKSCCSAFSEEM--------- 460

  Fly   861 TKAVKYPKNSSRSNASSKSKGSSMSVDS 888
                     ..|...:.:::|:|.|..|
 Frog   461 ---------GERLGTNKENQGASDSAKS 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377
ANF_receptor 53..374 CDD:279440
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 146/374 (39%)
Lig_chan 543..816 CDD:278489 102/277 (37%)
grik5-like.1NP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 146/374 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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