DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and Ir94d

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster


Alignment Length:636 Identity:118/636 - (18%)
Similarity:228/636 - (35%) Gaps:144/636 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 DYRYIIGNLDWHTMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYE-SEEPFQNVSCPLTNSM 302
            :|..::||.|...:|:            |..:.....|::|.::..|. .|.|..||   ||  :
  Fly    36 EYVLLLGNFDTTWLDI------------LWQLPVSVLQIKEHSRETYSLLENPSHNV---LT--I 83

  Fly   303 ALVYDG----VQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGL 363
            |.|.|.    :::|....:.:|.:||              .||....::.:|.|       .|..
  Fly    84 AFVNDSPEDILEILYRNLRMLNTQPV--------------LLVIRKSTIRVNSL-------LEWC 127

  Fly   364 RTDFKLEVIELAVSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYG--- 425
            .....|:|:.:|...|:.:..:|       ..|.|.  |:...|.|.|.:.:....:...:|   
  Fly   128 WHHQLLKVVAIAQDFMESLIVYS-------YNPFPV--LQFIERRLDNSTVIFEKRLENLHGYEV 183

  Fly   426 --MLKETSEK------LEGNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKY--GGIDPKTGEWN 480
              .|..:|.:      |||...|.|    .:....|.....|..||.:...:  ..|.|      
  Fly   184 PIALGGSSPRLIVYRDLEGKLIFSG----PVGNFMKSFEQRYNCRLVQPYPFDESAISP------ 238

  Fly   481 GMLREIIDSRADMGITDLTM----TSERESGVDFTIPFMSLGIGILFRKPMKEP-PKLFSFM-SP 539
              .|::|.| ...|...:.:    .....:|..:.|..||.  .::...|.:.| .:|:|.: ||
  Fly   239 --ARDLIAS-VQNGSVQIALGAIYPQVPYTGYSYPIELMSW--CLMMPVPEEVPHSQLYSMVFSP 298

  Fly   540 FS-GEVWLWLGLAYMGVSISMFVLG-RLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQ 602
            .: |...:.:.|..:.:|:::.:.| |:|.:|:                |...:||   .|.|.|
  Fly   299 MAFGITIVAMVLISLTLSMALRLHGYRVSFSEY----------------FLHDSCL---RGVLSQ 344

  Fly   603 QGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAK 667
            ...|:.......:|:........|::.|.|.:..:.|:|.......:...:.:..:    |....
  Fly   345 SFYEVLRAPALIKAMYLVICLLGLLITSWYNSYFSTFVTSAPRFPQLTSYESIRHS----NIKIV 405

  Fly   668 IGGATFN---FFKESNYPTYQRMYEFMRDNPQYMTNTNQEGVDRVENSNYAFLME---------- 719
            |....:.   ||.| |...|..:::...|..:::  ..::..|    :.|.::|.          
  Fly   406 IWKPEYEMLLFFSE-NMEKYSSIFQLQEDYKEFL--HLRDSFD----TRYGYMMPMEKWSLMKEQ 463

  Fly   720 ----STTIEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWW 780
                |:.:..:.:..|....|..:       ..|.||..:::...:.:|::...|||::.:...:
  Fly   464 QRVFSSPLFSLQDDLCVFHTVPIV-------FPMVKNSIFKEPFDRLILDVTATGLLSRWRDMSF 521

  Fly   781 QE--KRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEMV 829
            .|  |.|.....|........|:::.:|..::..:|........|.|||::
  Fly   522 TEMIKAGQLGLEDRGHPKEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELI 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 32/156 (21%)
ANF_receptor 53..374 CDD:279440 29/139 (21%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 70/407 (17%)
Lig_chan 543..816 CDD:278489 47/292 (16%)
Ir94dNP_001138099.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462868
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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