DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Ir85a

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster


Alignment Length:354 Identity:69/354 - (19%)
Similarity:116/354 - (32%) Gaps:100/354 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   528 KEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVL----GRLSPAEWDNPYPCIEEPTELENQFS 588
            |..|..::....|...||..:.::.:..::..::|    ||:              |.:|     
  Fly   308 KTAPTFWNIFRSFGSLVWALILVSVLVANVFCYILKSEVGRV--------------PMQL----- 353

  Fly   589 FANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDAD 653
            ||       |||....:::.|. :|.|.....|.:|.|::.|::..||.:.:..:..:..||...
  Fly   354 FA-------GALTMPMTQIPPN-HSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLG 410

  Fly   654 DLSKNK----------GGVNYGAKIGGATFNFFKESNYPTYQ-RMYEFMRDNPQYMTNTNQEGVD 707
            .|:::.          ..:.:...:|....:..:|....... :|||.||:|........:..:.
  Fly   411 ALARSHYHIIIRPRHVKHIQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEKYHIA 475

  Fly   708 RVE-NSNYAF--------LMESTTIE----YITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTL 759
            |.: ||....        ||.|..:.    ||..                ||.      ||...|
  Fly   476 RFQVNSRVHMHLGRPLFHLMNSCLVPFHAVYIVP----------------YGS------PYLGFL 518

  Fly   760 SQAVLEMQEQGL-----------LTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVM 813
            ...:....|.|.           ..|...|....:||.|    .||   .|.|::.:...||.:.
  Fly   519 DSLIRSSHEFGFERYWDRIMNSAFIKSGVKVVNRRRGSG----NDE---PVVLKLQHFHAVFALW 576

  Fly   814 GVGSFFGIFVSLLEMV-----LGVKERSD 837
            .||......|...|.:     |.|.:|.|
  Fly   577 LVGIGMACIVLAWEHLTHNYNLAVTKRRD 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377
ANF_receptor 53..374 CDD:279440
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 52/291 (18%)
Lig_chan 543..816 CDD:278489 58/311 (19%)
Ir85aNP_649833.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462835
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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