DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Ir75c

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster


Alignment Length:761 Identity:161/761 - (21%)
Similarity:254/761 - (33%) Gaps:212/761 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 TRWDFGAQLPTINLHPHPATLGVALRDMVVALGW---ESFTIIYESGEYLPTVRELLQMYGTAGP 184
            |.|.. .:|...||      |.:.|.:::|...|   |:|.::           |:|...|....
  Fly     2 TSWPL-YRLIVFNL------LEINLSNLMVFHCWSIKEAFPLV-----------EMLNQNGIFSQ 48

  Fly   185 TVTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDW 249
            .:.|:..:     |..||.:...::|   .|.:|....|.  ..:|:.|...:|..|....||.|
  Fly    49 YIDVQNPD-----NLANVHKEYLDSD---LVRLGVFLDLG--CDKAELVTNQSSRARLYNQNLHW 103

  Fly   250 HTMDLEPYQHAG--TNITGLRLVSPDSEQVQEVAKALYESEEPF-----QNVSCPLTNSMALVYD 307
            ..     |..||  |.:|.| ....:.....:|.....|.||.|     .|....|...:.:..|
  Fly   104 LL-----YDEAGNFTKLTQL-FEGANLSLNADVTYVSREDEERFILHDVYNKGSHLGGKLNITVD 162

  Fly   308 GVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEGLRTDFKLEVI 372
                            ..|.||......|     .|:..|.|..     |..:   |.|......
  Fly   163 ----------------QTLQCNRSHCQVK-----EYLSELHLRP-----RLQH---RMDLSSVTF 198

  Fly   373 ELA--VSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYGMLKETSEKLE 435
            .||  ||.:                  |.:|.|.::...:|                   |::..
  Fly   199 RLAALVSVL------------------PINSSEEELLEFLN-------------------SDRDS 226

  Fly   436 GNDQFEGFGIELIDELSKKLGFSY------TWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMG 494
            ..|.....|..||....:.|||..      ||.:|:  .:||.       .|||   .:..|::.
  Fly   227 HMDSISRIGNRLIMHTQEILGFKLHYIWCGTWSVQD--AFGGA-------IGML---TNESAELC 279

  Fly   495 ITDLT-----------MTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWL 548
            .|...           ||.:.:        |.::   .:||.|.....|...|:.||...||...
  Fly   280 TTPFVPSWNRLHYLHPMTEQAQ--------FRAV---CMFRTPHNAGIKAAVFLEPFMPSVWFAF 333

  Fly   549 G--LAYMGVSISM-FVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPK 610
            .  |.:.||.:.| |.|.|    .|  ...|::....|     .::|| .|.||...|||.|.||
  Fly   334 AGLLIFAGVLLWMIFHLER----HW--MQRCLDFIPSL-----LSSCL-ISFGAACIQGSYLMPK 386

  Fly   611 AYSTRAVAASWWFFTLILVSSYTANLAAFL---TVESLVTPINDADDLSKNKGGVNYGAKIGGAT 672
            :...|....:....:.::.:.||:.:.:.|   .|.|.:..|....|.|.:         :|..|
  Fly   387 SAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLD---------VGFDT 442

  Fly   673 FNFFK----ESNYPTYQRMY----EFMRDNPQYMTNTNQEGVDRVEN-------SNYAFLMESTT 722
            ..|.|    .|..|..:.:|    |..|| |..:..:.:|||.||.:       |..:|:.....
  Fly   443 VPFTKTYLVSSPRPDIRSLYKQKVESKRD-PNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVE 506

  Fly   723 IEYITERRCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKM-----KTKWWQE 782
            ..|:......|.::....:...||: :..|..||..|:|..:.|.|.|:.:|.     |||    
  Fly   507 KHYLPREISDLNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLETGITSKQSRFFSKTK---- 566

  Fly   783 KRGGGACSDADEDSGAVALEISNLGGVFLVMGVGSFFGIFVSLLEM 828
                   .....:|..:.:.:.....:|:.:.|..|..:.:.:||:
  Fly   567 -------LHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEI 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 57/279 (20%)
ANF_receptor 53..374 CDD:279440 53/260 (20%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 95/412 (23%)
Lig_chan 543..816 CDD:278489 68/298 (23%)
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 61/247 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462735
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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