DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Ir64a

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster


Alignment Length:931 Identity:168/931 - (18%)
Similarity:305/931 - (32%) Gaps:265/931 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 ENEDLQL---HGVSVSIEPGNSFETSKKLCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLD 122
            |:|.|:|   :|::   ||..:        .:|:.:|:..|........|.....|   :.|.|.
  Fly    18 EHELLELELDYGLA---EPQRT--------SLLQSSLILQFSQDYKHIPRITYFTC---QKPHLQ 68

  Fly   123 TRWDFGAQLPTINLHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTV-RELLQMYGTA---- 182
            |    ..|:|....|          ||...|..::....:|||..::..| .::|....|:    
  Fly    69 T----PNQIPNAAEH----------RDAFAAKNFQLIKSLYESELFVRIVLLDVLAQSPTSGRPN 119

  Fly   183 ----GPT--VTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYR 241
                |||  .:....:...|..:...:.|:......:.|.:...|....|.:.|....|.:..:.
  Fly   120 RPGNGPTGGFSQTPSQAQSNSEWLEGVLRMEALRQIAVVDLACGAVSRRFLELASAKMLYSEKFH 184

  Fly   242 Y-IIGNLDWHTMDLEPYQHAGTNITG-LRLVSPDSEQVQEVAKALYESEEPF-------QNVSCP 297
            : :|.:..||.. .:..:.:|....| :....|..:|:|........|.|.|       .|....
  Fly   185 WLLIEDFAWHGR-TQTAEGSGKRDDGEMEEEEPPGQQIQATDDEDLPSIESFLGGMNLYMNTELT 248

  Fly   298 LTNSMALVYDGVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYEG 362
            |...|          :|...:..|          ..|:.|   :||...:.|.            
  Fly   249 LAKRM----------SEAAHYTLF----------DVWNPG---LNYGGHVNLT------------ 278

  Fly   363 LRTDFKLEVIELAVSGMQKIGQWSGEDGFQEN---RPAPAHSLEPDMRSLVNKSFVVITAISEPY 424
                              :||.::..:|.|.:   |.........||:....:..||:|..:...
  Fly   279 ------------------EIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTG 325

  Fly   425 GMLKETSEKLEGN-DQFEGFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIID 488
            .::...:..:.|: |....|...|:  ::.:..|::|:.|.....:|.:  |.|.::||:..:|.
  Fly   326 TLMYYLTHTMSGHIDTMNRFNFNLL--MAVRDMFNWTFVLSRTTSWGYV--KNGRFDGMIGALIR 386

  Fly   489 SRADMGITDLTMTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYM 553
            :..|:|...:....||...:|......|.....:||.|.........|:.||:.:||:.  :...
  Fly   387 NETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWIL--IVGC 449

  Fly   554 GVSISMFVLGRLSPAEWD-----------------------------------NPYPCI------ 577
            || :::|:|..|:..||.                                   .|...:      
  Fly   450 GV-LTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSK 513

  Fly   578 ----EEPTELENQFSF-ANCLW---------------------------------FSIGALLQQG 604
                |:..|.|:.... |..||                                 |.:|.:.|||
  Fly   514 EKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQG 578

  Fly   605 SELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKIG 669
            ...:....|.|.:..:...|:..:...|:|::...|.:|...| |....||      |:...|:|
  Fly   579 LGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEKPKT-IKTLSDL------VHSSLKVG 636

  Fly   670 --GATFN--FFKESNYPTYQRMY-------------EFMRDNP--------------QYMTNTNQ 703
              ...:|  :|..:..|....:|             |...|.|              :.:.::::
  Fly   637 MEDILYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHE 701

  Fly   704 EGVDRVENS---------------NYAFLME-STTIEYITER-----RCTLTQVGALLDEKGYGI 747
            .|....:|:               .:||.:: :...:.|.|.     .|.||:|.....:|...|
  Fly   702 TGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQDICDLTEVSMFPPQKTVSI 766

  Fly   748 AMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLV 812
             |:||.|.|..:|..:..:.|.|:||.....|...|   ..|....|.|. :.:::..:....|:
  Fly   767 -MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRK---PPCVKKIETSD-LHVDMDTVSSALLI 826

  Fly   813 MGVGSFFGIFVSLLEMVLGVK 833
            :    .|...::|  |:||.:
  Fly   827 L----LFSYAITL--MILGTE 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 60/352 (17%)
ANF_receptor 53..374 CDD:279440 58/335 (17%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 93/501 (19%)
Lig_chan 543..816 CDD:278489 70/403 (17%)
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 28/118 (24%)
Lig_chan 563..828 CDD:278489 54/280 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462819
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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