DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and Ir25a

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001260049.1 Gene:Ir25a / 33683 FlyBaseID:FBgn0031634 Length:947 Species:Drosophila melanogaster


Alignment Length:1000 Identity:246/1000 - (24%)
Similarity:412/1000 - (41%) Gaps:225/1000 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LGF--ILTSLLLAFPGCRGERTNVGLVYENTDPDLEKIFHLAIS--KANEENEDLQLHGVSVSIE 75
            |||  :|:|..|.......:..||..:.|..:....|...:.::  |.|..      :|:||.::
  Fly    15 LGFLSLLSSFSLEIAAQTTQNINVLFINEVDNEPAAKAVEVVLTYLKKNIR------YGLSVQLD 73

  Fly    76 PGNSFETSKKLCKMLRQNLVAVFGPT---------------SNLAARHAMSICDAKELPFLDT-- 123
               |.|.:|...|:|.:.:...:..:               |.:|:....|...|..||.:..  
  Fly    74 ---SIEANKSDAKVLLEAICNKYATSIEKKQTPHLILDTTKSGIASETVKSFTQALGLPTISASY 135

  Fly   124 -------RW---DFGAQLPTINLHPHPATLGVALRDMVVALGWESFTIIYESGEYLP-TVRELLQ 177
                   :|   |...|...:.:.|....:..|:|.:|:.:...:..|:|:....:. ..:.|||
  Fly   136 GQQGDLRQWRDLDEAKQKYLLQVMPPADIIPEAIRSIVIHMNITNAAILYDDSFVMDHKYKSLLQ 200

  Fly   178 MYGTAGPTVTVRRYELDLNGNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYR- 241
            ...|......:.:   |........:.::||.|..:|.::|::          |.:.:|....: 
  Fly   201 NIQTRHVITAIAK---DGKREREEQIEKLRNLDINNFFILGTL----------QSIRMVLESVKP 252

  Fly   242 -YIIGNLDWHTMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYESEEPFQNVSCPLTNSMALV 305
             |...|..||.:.    |:.|                        |......|.:......||..
  Fly   253 AYFERNFAWHAIT----QNEG------------------------EISSQRDNATIMFMKPMAYT 289

  Fly   306 Y--DGVQLLAETYKHVNFRPVALSC----------------NDDSAWDKGYTLVNY--------- 343
            .  |.:.||..|| ::|..|...|.                ....||.|....:|.         
  Fly   290 QYRDRLGLLRTTY-NLNEEPQLSSAFYFDLALRSFLTIKEMLQSGAWPKDMEYLNCDDFQGGNTP 353

  Fly   344 MKSLTLNG----LTGPIRFDYEGLRTD------------FKLEVIELAVSG-----MQKIGQW-S 386
            .::|.|..    :|.|..:....|.|.            |::::..|.:.|     .:.||:| |
  Fly   354 QRNLDLRDYFTKITEPTSYGTFDLVTQSTQPFNGHSFMKFEMDINVLQIRGGSSVNSKSIGKWIS 418

  Fly   387 G-------EDGFQENRPAPAHSLEPDMRSL-VNKSFVVITAISEPYGMLKETSEKLEGNDQFEGF 443
            |       :|             |..|::| .:..:.:.|.:..|:.|..||:.|     .::|:
  Fly   419 GLNSELIVKD-------------EEQMKNLTADTVYRIFTVVQAPFIMRDETAPK-----GYKGY 465

  Fly   444 GIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGV 508
            .|:||:|::..:.|.||.:..||.|:|.:| :.|:|||::::::|.:||:|:..:::.:|||..:
  Fly   466 CIDLINEIAAIVHFDYTIQEVEDGKFGNMD-ENGQWNGIVKKLMDKQADIGLGSMSVMAEREIVI 529

  Fly   509 DFTIPFMSL-GIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDN 572
            |||:|:..| ||.|:.::| ..|..||.|::.....|||.:..||...|..|::..|.||..:.|
  Fly   530 DFTVPYYDLVGITIMMQRP-SSPSSLFKFLTVLETNVWLCILAAYFFTSFLMWIFDRWSPYSYQN 593

  Fly   573 PYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLA 637
            .....::..| :.:|:...||||.:.:|..||...|||..|.|.|||:||.|..|:::|||||||
  Fly   594 NREKYKDDEE-KREFNLKECLWFCMTSLTPQGGGEAPKNLSGRLVAATWWLFGFIIIASYTANLA 657

  Fly   638 AFLTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKE-SN--------------------- 680
            |||||..|.||:...|||:| :..:.|....|.:...:|:. ||                     
  Fly   658 AFLTVSRLDTPVESLDDLAK-QYKILYAPLNGSSAMTYFERMSNIEQMFYEIWKDLSLNDSLTAV 721

  Fly   681 ---------YPT---YQRMYEFMRDNPQYMTNTNQEGVDRVENS----NYAFLMESTTIEYITER 729
                     ||.   |.:|::.|::  ..:..|..|.|.||.||    .:|||.::|.|.|:...
  Fly   722 ERSKLAVWDYPVSDKYTKMWQAMQE--AKLPATLDEAVARVRNSTAATGFAFLGDATDIRYLQLT 784

  Fly   730 RCTLTQVGALLDEKGYGIAMRKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADE 794
            .|.|..||.....|.|.||:::....:|..:.|:|.:..:..|.|:|.|||:.......|...::
  Fly   785 NCDLQVVGEEFSRKPYAIAVQQGSHLKDQFNNAILTLLNKRQLEKLKEKWWKNDEALAKCDKPED 849

  Fly   795 DSGAVALEISNLGGVFLVMGVGSFFGIFVSLLE----------MVLGVKERSDE--NQVSFKTEL 847
            .|..::  |.|:||||:|:.||........:.|          .::.|.|.:.|  |......:|
  Fly   850 QSDGIS--IQNIGGVFIVIFVGIGMACITLVFEYWWYRYRKNPRIIDVAEANAERSNAADHPGKL 912

  Fly   848 LDEIRFILQCSG----NTKAVKYPK 868
            :|.:  ||..||    .:||...|:
  Fly   913 VDGV--ILGHSGEKFEKSKAALRPR 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 76/441 (17%)
ANF_receptor 53..374 CDD:279440 66/395 (17%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 133/408 (33%)
Lig_chan 543..816 CDD:278489 100/310 (32%)
Ir25aNP_001260049.1 PBP1_iGluR_AMPA_Like 40..426 CDD:107378 75/436 (17%)
PBP2_iGluR_putative 438..836 CDD:270435 133/408 (33%)
Lig_chan 565..870 CDD:278489 101/310 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462879
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.940

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