DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and GluRIIC

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:956 Identity:285/956 - (29%)
Similarity:477/956 - (49%) Gaps:96/956 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILTSLLLAFPGC--RGERTNVGLVYENTDPDLEKIFHLAISKAN--EENEDLQLHGVSVSIEPGN 78
            :|..:..||..|  ||::.|:|..:.:.:.:|||.|...::..|  |..:.::.:.:...::|.:
  Fly     7 LLGCMWSAFFMCRSRGQQINIGAFFYDDELELEKEFMTVVNAINGPESEQTMRFYPLIKRLKPED 71

  Fly    79 SFETSKK-LCKMLRQNLVAVFGPTSNLAARHAMSICDAKELPFLDTRWDFG-----AQLP----T 133
            ...|.:: .|.::...:.|:|||:|..|:.....:|::..:|.::  :|..     |:.|    |
  Fly    72 GSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIE--FDISDEGIQAEKPNHQMT 134

  Fly   134 INLHPHPATLGVALRDMVVALGWESFTIIYESGEYLPTVR--ELLQMYGTAGPTVTVRRYELDLN 196
            :||:|..|.|..|..|:|...||..|||:|::.:.....|  :|||:.......|.||::..|  
  Fly   135 LNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHNDVVRVRKFHKD-- 197

  Fly   197 GNYRNVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYI-IGNLDWHTMDLEPY--- 257
            .::|.:.:.||.  :...|:......|.|....:.:.|| |..|.:| :.||:.:|..||..   
  Fly   198 DDFRVMWKSIRG--ERRVVLDCEPNMLVELLNSSTEFGL-TGQYNHIFLTNLETYTDHLEELAAD 259

  Fly   258 -QHAGTNITGLR-LVSPDSE-------QVQEVAKALYESEEPFQNVSCPLTNSMALVYDGVQLLA 313
             :....|||..| ||:||..       .|.:....:|||.:|      |.|....|::|.:||.|
  Fly   260 NETFAVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYESSDP------PRTLIHDLIHDALQLFA 318

  Fly   314 ETYKHVNF----RPVA--LSC----NDDSAWDKGYTLVNYMKSLT----LNGLTGPIRFDYEGLR 364
            :::::.:|    |.|.  ::|    :....|..|..|...||..:    .|..|..::||.:|.|
  Fly   319 QSWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARLMKGTSGVNNTNFRTSILQFDEDGQR 383

  Fly   365 TDFKLEVIELAVSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRSLVNKSFVVITAISEPYGMLKE 429
            ..|.:||.: .:.|: .|..|.......:        |..|:::.....:.|.|.|..||....|
  Fly   384 ITFNIEVYD-PLDGI-GIAIWDPRGQITQ--------LNVDVKAQKKMIYRVATRIGPPYFSYNE 438

  Fly   430 TSEKLE--GNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRAD 492
            |:.:|.  ||..::|:.::|||.:::.:||.|.:....|.:||.:|.:|.:|||::.|||::.|.
  Fly   439 TARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAH 503

  Fly   493 MGITDLTMTSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGLAYMGVSI 557
            |||.|||:|..|::.||||:|||.||:.||..|.......|.::::||.||||:|:.::...::.
  Fly   504 MGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTF 568

  Fly   558 SMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGALLQQGSELAPKAYSTRAVAASWW 622
            ...::.|:|..:|:||:||..:|..||||:...|..|.::.:::..|.::.|::...|...|:||
  Fly   569 LKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWW 633

  Fly   623 FFTLILVSSYTANLAAFLTVESLVTPINDADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRM 687
            .|.:|:.:|||||||||||...:...|.:..|||..| .|.:|...||:|:|...:||...|:..
  Fly   634 IFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQK-KVKFGTIYGGSTYNLLADSNETVYRLA 697

  Fly   688 YEFM-RDNPQYMTNTNQEGVDRVENS--NYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAM 749
            :..| .|:|...|..|.||||||..:  :|.||||:||:||..|:.|.|..||....||.|.||:
  Fly   698 FNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAV 762

  Fly   750 RKNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMG 814
            .....||..||.|:|::.|:|.|..:|.|||  |....:|.:..:......:....|.|:|..:.
  Fly   763 PFGAEYRSNLSVAILKLSERGELYDLKQKWW--KNPNASCFEEPDPDATPDMTFEELRGIFYTLY 825

  Fly   815 VGSFFGIFVSLLEMVLGVKERSDENQVSFKTELLDEIRFILQCSGNTKAV--KYPKNSSRSNASS 877
            .|......:.:.|.::.|::.:.|.:::||.....||||:|....|.|.:  ..|.:|.|   ::
  Fly   826 AGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPIVAGTPISSVR---TT 887

  Fly   878 KSKGSSMSVDSLPEDT-----------------SEADASGKHNHGK 906
            ..:....|:|..|:.:                 ....:||.:|.|:
  Fly   888 PRRSLDKSLDRTPKSSRRVVIGRSSEEMREMAQGSGSSSGSNNAGR 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 101/394 (26%)
ANF_receptor 53..374 CDD:279440 93/361 (26%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 146/374 (39%)
Lig_chan 543..816 CDD:278489 99/275 (36%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 102/392 (26%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 21/89 (24%)
PBP2_iGluR_Kainate 423..794 CDD:270432 147/373 (39%)
Lig_chan 554..828 CDD:278489 99/276 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462603
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17567at33392
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
77.000

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