DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik and Ir21a

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster


Alignment Length:739 Identity:155/739 - (20%)
Similarity:263/739 - (35%) Gaps:226/739 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 TNSMALVYDGVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLNGLTGPIRFDYE-- 361
            |||:..:   |..:|:.|  :|..|..:..:.......|..|.|..|::.:....|.|..|||  
  Fly    94 TNSLVGL---VNKIAQEY--LNKCPPVIYYDSFVEKSDGLILENLFKTIPITFYHGEINADYEAK 153

  Fly   362 -----------------------------GLRTDFKLEVI--------------ELA--VSGMQK 381
                                         |.:|:.::.::              ||:  :..:..
  Fly   154 NKRFTSHIDCNCKSYILFLSDPLMTRKILGPQTESRVVLVSRSTQWRLRDFLSSELSSNIVNLLV 218

  Fly   382 IGQWSGEDGFQENRP--APAHSLEPDMRSLVNKSFVVIT-----AISEP----------YGM--- 426
            ||:....|..:| ||  ...|.|..|  .|.:.:.||:|     |:|.|          :|.   
  Fly   219 IGESLMADPMRE-RPYVLYTHKLYAD--GLGSNTPVVLTSWIKGALSRPHINLFPSKFQFGFAGH 280

  Fly   427 ---------------LKETSEKLEGNDQFEGFGIELIDELSKKLGFS--YTWRLQEDNKYGGIDP 474
                           ::.......|..:::|....|:..:||:|.||  .|......|..|.:|.
  Fly   281 RFQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLNFSIDITETPTRSNTRGVVDT 345

  Fly   475 KTGEWNGMLREIIDSRADMGITDLTMTSER--ESGVDFTIPFMSLG----IGILFRKPMKEPPKL 533
                   :..:||:...|:|::.:.:|.||  :|.       ||:|    .........|..||.
  Fly   346 -------IQEQIIERTVDIGMSGIYITQERLMDSA-------MSVGHSPDCAAFITLASKALPKY 396

  Fly   534 FSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLS----PAEWDNPYPCIEEPTELENQFSFANCLW 594
            .:.|.||...||:.|...|:|....:....||:    ...|.          |:||.|      |
  Fly   397 RAIMGPFQWPVWVALICVYLGGIFPIVFTDRLTLSHLMGNWG----------EVENMF------W 445

  Fly   595 FSIGALLQQGSELAPKAY------STRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDAD 653
            :..|......|.....::      |||.:..::|.||:|:.|.||.::.||:|:.:....::...
  Fly   446 YVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIAFVTLPAFPDTVDSVL 510

  Fly   654 DL--------SKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNTNQEGVDRVE 710
            ||        :.|.||..          .:|:.|.:....|:|:.|.     ...:..||:..|.
  Fly   511 DLLGLFFRVGTLNNGGWE----------TWFQNSTHIPTSRLYKKME-----FVGSVDEGIGNVT 560

  Fly   711 NS---NYAFLMESTTIEYITE---------RR--------C-TLTQVGALLDEKGYGIAMRKNWP 754
            .|   |||||.....:||:.:         ||        | .|.|:|.|...:..         
  Fly   561 QSFFWNYAFLGSKAQLEYLVQSNFSDENISRRSALHLSEECFALFQIGFLFPRESV--------- 616

  Fly   755 YRDTLSQAVLEMQEQGLLTKM--KTKWWQEKRGGGACSDADEDSG-------AVALEISNLGGVF 810
            |:..:...:|..|:.||:.|:  :..|..::...|....|...:.       ...|..::..|:|
  Fly   617 YKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQEERQLTTADTEGMF 681

  Fly   811 LVMGVGSFFGIFVSLLEMVLGVKERSDENQVSFKTELLDEIRFILQCSGNTKAVKYPKNSSRSNA 875
            |:|.:|.|.|....:.|:|.|:..:                     |   .:.:|..:.|:.|:.
  Fly   682 LLMALGYFLGATALVSEIVGGITNK---------------------C---RQIIKRSRKSAASSW 722

  Fly   876 SSKSKGSSM--SVDSLPEDTSEAD 897
            ||.|.||.:  :.:.|..|..:|:
  Fly   723 SSASSGSMLRTNAEQLSHDKRKAN 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 24/138 (17%)
ANF_receptor 53..374 CDD:279440 19/119 (16%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 99/451 (22%)
Lig_chan 543..816 CDD:278489 70/320 (22%)
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 78/338 (23%)
Lig_chan 407..662 CDD:278489 65/294 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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