DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grik and Ir8a

DIOPT Version :9

Sequence 1:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:893 Identity:223/893 - (24%)
Similarity:378/893 - (42%) Gaps:196/893 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 PFLDTRWDFGAQLPTINLHPHPATLGVALRDMVVAL-----GWESFTIIYESGE------YLPTV 172
            ||||...||..|....|:    |.:.:..||.|.|:     |:...|:|.::.:      :|..:
  Fly   116 PFLDMFGDFMRQKRANNV----AMVFMNARDAVEAMQQMLVGYPFRTLIMDASQTDPGQHFLERI 176

  Fly   173 RELLQMYGTAGPT-VTVRRYELDLNGNYRNVLRRIRNAD------DFSFVVVGSMATLPEFFKQA 230
            |.|     ...|| :.:......:||    :..:::.||      ::.||.:.:...:.::.:||
  Fly   177 RSL-----RPAPTYIALFARAAAMNG----IFEKVQKADLFQRPLEWHFVFLDTRDRVFKYRRQA 232

  Fly   231 QQVGLVTSDYRYIIGNLDWHTMDLEPYQHAGTNITGLRL--------------VSPDSEQVQEVA 281
            :.....|.:.|.|..::..      |..:.|:..|..|.              |||.      ..
  Fly   233 ELCTRFTLNPRAICRSMPM------PDLYCGSGFTMQRAMLLNVLRSLINAAQVSPG------YP 285

  Fly   282 KALYESEEPFQNVSCPLTNSMALVYDGVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKS 346
            .|:|:        .|..|.|.:.|.|.::                  .||..|   ..:|::...
  Fly   286 LAIYQ--------DCNATASSSEVSDPLE------------------KDDYNW---LDMVHWSNF 321

  Fly   347 LTLNGLTGPIRFDYEGLRTDFKLEVIELAVSGMQKIGQWSGEDGFQENRPAPAHSLEPDMRSLVN 411
            |   ....|:    ..::..|:..|..|..:.....|.:|.|  .:......|.|...:|| |:|
  Fly   322 L---AYAPPL----PHIQDQFQSPVPGLTFAVNISAGYYSSE--HEAKTDLAAWSSVGEMR-LLN 376

  Fly   412 KS-------FVVITAISEPYGMLKE---TSEKL---EGNDQFEGFGIELIDELSKKLGFSYTWRL 463
            ::       |.:.||.|.|:..|:.   |.|.:   .|...:||:.|:.|..||:||.|.:....
  Fly   377 ETISPARRFFRIGTAESIPWSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVA 441

  Fly   464 QEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTMTSERESGVDFTIPFM-SLGIGILFRKPM 527
            .|....|.:: :.|||:|::.:::....|..|..|.|.||||..:||..|:. ..||.|..|||:
  Fly   442 PEVGHMGELN-ELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPV 505

  Fly   528 KEPPKLFSFMSPFSGEVWLWLGLAYMGVSISMFVLGRLSPAEWDN-----PYPCIEEPTELENQF 587
            :. ..||.||:....||||.:..|.:|.:|.::.:.:.||....|     ||.|        .:|
  Fly   506 RR-TSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYAC--------REF 561

  Fly   588 SFANCLWFSIGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPINDA 652
            :.....||::.:...||...||||.|.|.:.|::|.|.:::::::|||||||||||.:.||:...
  Fly   562 TLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSL 626

  Fly   653 DDLSKNKGGVNYGAKIGGATFNFFKESNY--PTYQRMY---------EFMR----DNP---QY-- 697
            :.|:: :..:||.......|..:|....:  .|..||:         :|.:    |.|   ||  
  Fly   627 EQLAR-QSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGH 690

  Fly   698 ---MTNTNQ------EG---VDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMR 750
               ..|::|      ||   ||..||::|||:.:|..|:|...|.|.||:||.:..|:.|.:|::
  Fly   691 ILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQ 755

  Fly   751 KNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSDADEDSGAVALEISNLGGVFLVMGV 815
            :.....|.||.|:||:|:.....::|.|:|.:......  ...||...:.||  :|||||    :
  Fly   756 QGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNC--PLSEDQEGITLE--SLGGVF----I 812

  Fly   816 GSFFGIFVSLLEM---VLGVKERSDENQVSFKTELLDEIRFILQCS---GNTKAVKYPKNSSRSN 874
            .:.||:.::::.:   ||..|::.:..:::       ::|.:...|   ||:........|:...
  Fly   813 ATLFGLVLAMMTLGMEVLYYKKKQNALEIT-------QVRPVNDSSGSGGNSSTAPPTATSTTKQ 870

  Fly   875 A------SSKSKGSSMSV-----------DSLPEDTSEADASGKHNHG 905
            |      .::.|.:.:|.           ..||...:..|...|..||
  Fly   871 AWHIPVLEAEEKPAKVSPPPSFETATFRGKKLPARITLGDGKFKPRHG 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 58/303 (19%)
ANF_receptor 53..374 CDD:279440 54/286 (19%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 131/420 (31%)
Lig_chan 543..816 CDD:278489 95/309 (31%)
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 130/413 (31%)
Lig_chan 520..818 CDD:278489 96/314 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.010

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